Gene detail information of Glyur000001s00000155 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27320.1 | 8.00E-163 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_004495762.1 | 0 | PREDICTED: gibberellin receptor GID1C-like [Cicer arietinum] |
| COG | YP_003392831.1 | 8.00E-27 | alpha/beta hydrolase [Conexibacter woesei DSM 14684] |
| Swissprot | tr|Q940G6|GID1C_ARATH | 0 | Gibberellin receptor GID1C |
| trEMBL | tr|G7I7F8|G7I7F8_MEDTR | 0 | Gibberellin receptor GID1c-like protein {ECO:0000313|EMBL:AES61294.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 774105 | 776507 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14493 | GID1 | EC:3.-.-.- | Plant hormone signal transduction | map04075 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000155.1 | PF07859.8 | Abhydrolase_3 | 109 | 322 | 1.20E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.701 |
| SRR1783600 | control | 21.413 |
| SRR1783602 | moderate drought stress | 22.113 |
| SRR1811619 | moderate drought stress | 22.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.104 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.366 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.661 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.584 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.304 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.193 |
| SRR2868004 | Drought Stress (root) | 56.959 |
| SRR2967015 | Control (root) | 62.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.379 |
| SRR9715740 | Leaf | 37.286 |
| SRR9715741 | Leaf | 38.310 |
| SRR9715739 | Root | 65.595 |
| SRR9715742 | Root | 49.773 |
| SRR9715743 | Root | 48.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.739 |
| SRR8749028 | MeJA induced 9h | 10.170 |
| SRR8749029 | MeJA induced 9h | 6.339 |
| SRR8749030 | Uninduced | 3.879 |
| SRR8749031 | Uninduced | 2.182 |
| SRR8749032 | Uninduced | 2.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.059 |
| SRR8400027 | Control - Root | 38.986 |