Gene detail

Gene detail information of Glyur000001s00000151

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H
NR	KEH43067.1	breast carcinoma amplified sequence 3 protein [Medicago truncatula]
Swissprot	tr\|Q8H1Q5\|AT18H_ARATH	Autophagy-related protein 18h
trEMBL	tr\|A0A072VMK6\|A0A072VMK6_MEDTR	Breast carcinoma amplified sequence 3 protein {ECO:0000313\|EMBL:KEH43067.1}

Sequence

Transcript Sequence

>Glyur000001s00000151.1
ATGAAAGGTGAGTAGAACNAAGAAATAGAAGGAAAGAGGCGTGGGGTTGATGGTAATTTGGAGCGAAGTCGAAGTTTGAAAATATGGGAAGGGGACGTAGATGACATTTGTGAAAATGTCGTGGGATCTAAGTGACATTTGTGGAAATTAGCATTGCGATTAGCACCAAGCAAGCAACAACAAGAAGCGAAGCAGAGTCGCGGTGTGTGTGTGTGTGTAAACTCAAAACTCATCAGAAAGAGGAACCGTCTCCTGTTTAAGGTCAAAATTTCTTCAACCACCAACTAAAACCGAACACCGGAGCTCTACGCCGCCGTGTAAGGCGAATCCCGACGCCTCTAATTCTTATGCTATATTCGATCGNCTGCGTTCCGCGACTCTCGTCGGCGGGGACGGAATTCCCGGTGACTCACCGGTGGTGGCCCGCAGAAGATCGTGCCGTTTGTTCTTATGAAGAATCAGGTTAAGAGCAACGGTTGCAAGAGCAATGGATTCGTTCCTTCTTCCTTCAAGTTCATTTCGTCTTGCATTAAGACCGCCTCCTCCGGCGTCCGTTCGGCCGGCGCNTCCGTCGCCGCCTCCATCTCCGGCGACGGACACGACCGCAAGGACCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAGCTCAGTCTGTCTTCTTTCAAACGTGTCCTCTTACTCGGTTATTCCAATGGCTTTCAAGTTCTTGATGTCGAAGATGCCTCTAATATCAGGGAACTTGTCTCAAAACATGATGATCCAGTTTCATTTTTACAGATGCAGCCTGTCCCTGCAGAATCAGAGGGTTGTGAAGGATTTAGAGCATCACATCCTTTACTCTTGGTTGTTGCATGTGATAAATCGAAGATCCCTGGTACAATGCAAAATGTGAGAGATGGCCATAACGAAGCCCAAGCTGAAAATATTATCAGCTCAGCTACAGCNGTTAGATTTTACTCACTAAGGTCCCATACTTATGTTCATGCTCTGAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCTCAAATAGTGNCTGTGGGTCTTGCTACTCAAATATATTGTTTTGATGCTCTTACTCTTGAGAATAAATTCAGTGTTCTCACTTATCCTGTGCCTCAGTTGGGAGGCCAAGGAATGGTTGGGGTTAATATTGGCTATGGTCCTATGGCTGTTGGGTCGCGGTGGTTAGCCTATGCCTCAAACAACCCACCATTGTCAAACACAAGCCGCTTAAGTCCTCAAAGCCTTACTCCTCCTGCTGTCAGCCCATCAACATCACCAAGCAATGGAAACCTGGTAGCCCGATATGCCATGGAATCTAGCAAGCATTTGGCTGCTGGGCTGATCAACCTTAGTGATATGGGGTACAAAACATTGTCTAAATACTATCAAGATCTTATACCTGATGGGTCAAGTTCCCCCGTATCACCAAATTCAAGCTGGAAAGTTACTCGATTTACTTCAAATTCTACAGAAACAGATATGGCTGGGGTGGTTGTTGTCAAGGATTTCGTTTCTAGAGCTGTTGTGGCACAATTTAGGGCCCATACTAGTCCAATATCTGCACTATGTTTTGACCCNAGTGGGACACTTCTAGTTACTGCCTCAATTCATGGTAACAACATTAATATATTTCGAATTATGCCTTCCTGCTCAAGGAATNGTTCAGGTTCTCAAAGCAGTGATTGGAGCTGTTCTCATGTGCACCTTTACAAGCTCCACCGTGGCATGACATCTGCTGTAATACAGGATATTTGTTTTAGCCATTACAGTCAGTGGGTTGCCATCATTTCCTCTAAGGGAACTTGTCATATTTTTGCTCTTTCCCCTTTTGGTGGTGAGACAGTTCTTAAGATACACAATCAGGATACAGAAGGGCCTGTTCTTTTGCCAATTTTTCCTCTACCATGGTGGTTCACTCCACATTTTACTGTAAACCAGCAGCAGCTTTGCCAGGCACCCCCACCTCCTGTTGTTCTCTCTGTGGTTAGCAGAATAAAAAATATTAATGCTGGGTGGCTCAATACAGTTAGTAATGCTGCATCTTCTGCAGCAGGGAAAATCTCTGTTCCATCTGGCGCTGTTTCTGCTGTTTTTCATAGTTCCATTCCTTGTGATTCACACAATGCATACTCAAAAGCTCATGCTATGGAACACGTATTGGTTTATACCCCTTCTGGTCATTTAATTCAATATAACCTACTACCGCCATTGATGGCAGAGACAAGTGAAACTGCTTCAAGAACAGGCCAAGTTCCTTCATCACAGATACAAGAAGAAGATTTACGAGTGAAGGTTGAACCTGTTCAATGGTGGGATGTCTGTAGGAGATGTGATTGGCCAGAAAGAGAGGTATATATATCGGGGAGTACACTTGGTGGACNGGAAGCTGCTGAGACGATCTTGGATATTTCAAATGATGAAGACAACAGAGCTGGGAACAATAATTCTATAAAACTTNATCAGCAATGTCACTTTTCGAATGCAGAGGTACATATAAGCTCTGGGAGGATACCAATTTGGCAGAAGTCTGAGGTGTCTTTCTTTGTGATGAGTCCTTTGGAAGCTGGGGAACTGANTACATGTGAATTTCTTACCAATGGAGAGATTGAAATAGAGAATATTCATGTTAATGAGGTTGAAATAAGACAGAAGGATTTGTTGCCCGTCTTTGATCATTTCCATAAAATTCAGTCTACTTGGGGTGAAAGAGTTATTGTTATGGGAAGATGCTCTAGCTCTTCATCTGATTCACATGGAACTGAAGAGAAGTTGTCAGAAGATGCTGCAATTTCCCATTCAAAGTTTATGGTACCTGGCTTAGCTGAAAAAACAGATGTCGGTGCCTCAAATATTGCTAATAGTATANCTACAAAGGATAAATCATCAGAACATGGAAAAGCCAGTGACAGTTTCAATTCAAGTTTTAGTGGTTGTGATGTGAATATGAATGTTATGTGTGAGGAGTCAATACGTGACTCACCGGATTATGAGCAATTTTTTCAAGAAGGTTATTGTAAAGCATCGGTTGACTGTCATGAATCAACAGAAGTTGCTACTGATGTGGATTGTAGCAGTCCCTGTGGCAGGGAGAAATCTGATGAAGATGGTGATAATGATGACATGCCTGGTGATGTATTTGATTTCTCTGAGGAAGGTTAATGGCTGCTCTGTTTTATGCTTTCTTCCCTCTCTTCGAATTGTTGTAAATTGGTGGTGCAAAGGAATTTAATTAACAAATGCAGGTGATTTCCTTGCAACAAGCTAAATGCTACTGACCATTGATTCAAGGAATTTAATGTTCTTCGCTCACAATATTCCGAGTCCAGTGATTCTTCTGACCTTCTAATCTTCTTTCTTTCGGCCTTCCAGTGATGGCAATTGGCAAGCTGCATTGAATGCATGAAATCTACCAAATAATAGCTCCACAGTCGATACTTCGGTATCAAGAGTCAGAAGTTGGCTCCAAGACAAAAAGGGGTGGTCCCTTCCAAGTTCTCAGCCTCCAATTATATATGCAGTTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	752039	759707	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000151.1	PF00400.27	WD40	362	388	1.70E-05
Glyur000001s00000151.1	PF12490.3	BCAS3	507	741	1.30E-63
Glyur000001s00000151.2	PF00400.27	WD40	362	388	1.70E-05
Glyur000001s00000151.2	PF12490.3	BCAS3	507	741	1.30E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.929
SRR1783600	control	8.741
SRR1783602	moderate drought stress	8.840
SRR1811619	moderate drought stress	8.683

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.189
DRR006520	Root Summer glycyrrhizin high producing strain	8.061
DRR006521	Root Winter glycyrrhizin high producing strain	10.609
DRR006522	Root Winter glycyrrhizin high producing strain	9.889
DRR006523	Root Summer glycyrrhizin low producing strain	8.999
DRR006524	Root Summer glycyrrhizin low producing strain	8.838
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.214
SRR2868004	Drought Stress (root)	37.446
SRR2967015	Control (root)	32.982

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.542
SRR9715740	Leaf	13.316
SRR9715741	Leaf	15.162
SRR9715739	Root	3.882
SRR9715742	Root	11.817
SRR9715743	Root	10.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.619
SRR8749028	MeJA induced 9h	28.212
SRR8749029	MeJA induced 9h	22.234
SRR8749030	Uninduced	22.439
SRR8749031	Uninduced	28.988
SRR8749032	Uninduced	19.936

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.051
SRR8400027	Control - Root	24.342