Gene detail

Gene detail information of Glyur000001s00000144

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05170.1	2.00E-115	Phosphoglycerate mutase family protein
NR	XP_003591056.1	0	hypothetical protein MTR_1g082360 [Medicago truncatula]
COG	YP_004961561.1	8.00E-57	hypothetical protein SBI_03309 [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|Q9MAA2\|AT74_ARATH	4.00E-148	Phosphoglycerate mutase-like protein AT74 {ECO:0000305}
trEMBL	tr\|G7I7H1\|G7I7H1_MEDTR	0	Phosphoglycerate/bisphosphoglycerate mutase family protein {ECO:0000313\|EMBL:AES61307.1}

Sequence

Transcript Sequence

>Glyur000001s00000144.1
GTGAAAAGCAGCAGAACAGAATATTGAAAATCAAGCCGTGCTGTTGACAAATAATAACAATATAAAATTCACAATTTCAAATATGGAATTGGCTGTTGTGCGTGCGCGTTCATACTTTATAGCTGCCGCGGCTTGACCAGAGAATCAGTTCCCATGGGATGGTAGTTAGTCAAAATTATAAATCAAGGGAATGAAAAGGAGACGATGAAAACGAAAGCAAATAATAATTACATAATTAATACCAAACACAGAAGAAAGAAGAAAGCGAGCGAGAGTTAGAATTATTAGAATTATAGAATCATCATCAATCATGGGTGTGCTTCCGAAGAGGATAATACTGATGCGTCACGGCGAGTCCCAAGGGAACCTGGACACGTCAGCATACACCACCACACCGGACCACGGCATTCAGCTGACACCGCAGGGAATCGCCCAGGCGCGCCTCGCCGGCGGCAACCTCCGCCGCATCATGGCCGGCGAGGGATGCTCCCCGAACTGGAGGGCGTACTTCTACGTGTCTCCCTACGCCCGCACCCGATCCACCCTCCGCGAGGTTGGTCGATCCTTCTCGAGGAAGCGCGTGATCGGCGTGAGGGAAGAGTCGCGGATCCGAGAACAGGACTTCGGGAACTTCCAGGTGGAAGAGCGCATGAAGGTCATCAAGGAAACCCGTGAACGTTTCGGAAGGTTCTTCTATCGCTTCCCCGAAGGTGAATCCGCCGCCGATGTCTTCGATCGCATCTCAGGTTTCTTTGAATCTCTGTGGAGGGACATAGACATGAACAGGCTTCACCACGATGCTAACAACGATCTGAACCTGGTGATAGTGTCACACGGGCTGACGTCACGGATATTCCTGATGAAGTGGTTCAAGTGGACGGTTGAGCAGTTCGAGCGCCTCAACAACTTNGGTAACTGCGAGTTCCGCGTGATGCAGCTCGGGAGCGGCGGCGAGTACAGCCTGGCGGTTCACCACACGGAGGAGGAGATGCTCGAATGGGGTCTCTCCCCCGACATGGTCGCCGACCAGAAGTGGCGCGCCACCGCGTCTAGAGGTTCCTGGAATGACCAGTGCCCCTGGTACCTCGATGGTTTCTTCGATCGCCTTGCTGATGATTCCGACGATGATGATCAAACCATGGAAAATGGAGGTGAAACTGAAACCAAACCAACAACTCTTTGATCTCTTTTGAGTATTATATTTTATCTCCATAATAGGTTGATTTCTCTTTTTTTTTTTTCATTTTTAAATGATGAGTAGGAGAATTTTCAATAGCAAAAAAAAGGAGGGGGGGTGGGGGTGGGAATTGATGGGAATGATTGGTGTGGTGTTCGGGTGTGTGTACTCAGTATGCACTGATCTTGTATATGGTTTCTTCAACAAATGATTTATGATTGTGATCCTCAGCGGTTAAAAGGAATTCATTCATCAAAAAATATATTATGTAGTAAAAGGAAAACATGCATGGAATTTGTGACCTCTTGCGGTTGATTTTCCTTACTGCAGAGGATCCAATTTCCTCGGGCACACTCATTCTGTTCTGTTTCTGTATGTCAAAAATTAATCTGATTTTGTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	736537	738307	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000144.1	PF00300.17	His_Phos_1	7	182	6.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.538
SRR1783600	control	10.719
SRR1783602	moderate drought stress	7.426
SRR1811619	moderate drought stress	7.568

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.023
DRR006520	Root Summer glycyrrhizin high producing strain	21.934
DRR006521	Root Winter glycyrrhizin high producing strain	2.748
DRR006522	Root Winter glycyrrhizin high producing strain	2.737
DRR006523	Root Summer glycyrrhizin low producing strain	39.469
DRR006524	Root Summer glycyrrhizin low producing strain	38.603
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.412

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.276
SRR2868004	Drought Stress (root)	44.704
SRR2967015	Control (root)	53.165

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.308
SRR9715740	Leaf	21.362
SRR9715741	Leaf	54.653
SRR9715739	Root	36.717
SRR9715742	Root	48.472
SRR9715743	Root	44.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.124
SRR8749028	MeJA induced 9h	17.939
SRR8749029	MeJA induced 9h	26.793
SRR8749030	Uninduced	35.362
SRR8749031	Uninduced	19.544
SRR8749032	Uninduced	28.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.606
SRR8400027	Control - Root	21.123