Gene detail information of Glyur000001s00000142 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27395.2 | 9.00E-99 | Mitochondrial inner membrane translocase complex, subunit Tim44-related protein |
| NR | AFK37616.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_005605493.1 | 3.00E-07 | hypothetical protein BJ6T_06100 [Bradyrhizobium japonicum USDA 6] |
| trEMBL | tr|I3SBH4|I3SBH4_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK37616.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 730198 | 735065 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000142.1 | PF04280.10 | Tim44 | 147 | 299 | 7.90E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.777 |
| SRR1783600 | control | 11.051 |
| SRR1783602 | moderate drought stress | 8.142 |
| SRR1811619 | moderate drought stress | 7.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.119 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.115 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.022 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.668 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.602 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.761 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.547 |
| SRR2868004 | Drought Stress (root) | 10.801 |
| SRR2967015 | Control (root) | 10.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.611 |
| SRR9715740 | Leaf | 10.506 |
| SRR9715741 | Leaf | 8.278 |
| SRR9715739 | Root | 1.023 |
| SRR9715742 | Root | 6.348 |
| SRR9715743 | Root | 4.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.147 |
| SRR8749028 | MeJA induced 9h | 17.715 |
| SRR8749029 | MeJA induced 9h | 22.234 |
| SRR8749030 | Uninduced | 7.007 |
| SRR8749031 | Uninduced | 6.229 |
| SRR8749032 | Uninduced | 3.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.888 |
| SRR8400027 | Control - Root | 18.702 |