Gene detail

Gene detail information of Glyur000001s00000141

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54790.1	2.00E-155	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	ACU17816.1	0	unknown [Glycine max]
Swissprot	tr\|Q3ECP6\|GDL22_ARATH	0	GDSL esterase/lipase At1g54790 (Precursor)
trEMBL	tr\|C6T7L4\|C6T7L4_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU17816.1}

Sequence

Transcript Sequence

>Glyur000001s00000141.1
AGCAATACAATCTCGTGGATATGCTAATGCAAGTGCAAGTCAAGACAAATGNACGCACGCAAACGGTGCATCCAAATGCAAGATAAATCAAGCATTTTCTTGAACGGCATGAGGATTAGCATGGAAATGCAAACCAAAAGGAACCGTTTCGTTTCCTTTTGGATTTTAGTTGCTTTCAAACCATCATAAGCAACCCTTTTTTCTTTTATGTTGGGATTCACTTCACATTAGCTATTTGAAGCAACCAACATCAATTTGGGGTGTGCAAAGTGCAATATGCATGCATAAAAAGGGCACCATTACCTGGTTGGTATTACTACTGTTTGGCTGATCTGTTTGCACACGAGAAGTGAGAGTTGAGTGGTATGGCTTCTAAGTATGTTGTTGTTCTTCAAGTTGTGTTGTTTTGCATCTGTTTGGCTGTGGCAAACTCTGTTGACTTCAGTTACCCAGCAGTTTTCAACTTTGGTGATTCAAACTCGGACACGGGTGAACTTGTTGCAGGGTTGGGCATTCAACTTGCCCCACCTAATGGACGGAATTACTTCAAAACTCCATCTGGGAGGTTCTGCAATGGCCGTCTCATAGTTGACTTCCTAATGGATGCAATGGACTTGCCATTCTTAAATGCCTATATGGATTCAGTGGGTTTGCCAAATTTCCACCAAGGATGCAACTTTGCAGCAGCAGGTTCAACTATCCTTCCAGCCACTGCAACATCGATCAGCCCATTCTGCTTTGGGGTTCAGGTATCTCAGTTTCTGCTATTCAAAGCCCGAGTTCTTCAATTGCTTGCAGGTAAACGTCTTCACATGACTTCAGTGTCAAAACCAAGTTTGCTGGTTATCTCATTCATTCATGTGAAGGAAAATTGTCACAACAATGTTTCAGGCAAGAAATTTGATAAATACATCCCGGCTGAAGATTATTTCGAGAAGGGGTTATACATTTTTGACATAGGCCAGAACGATCTTGCTGGTGCATTTTATTCAAAAACTTTGGACCAAATAATTGCCTCAATTCCAACAATTCTGTTGGAATTTGAAAATGGAATAAAGAAACTGTATGACCATGGGGCTAGGAATTTTTGGATACATAACACAGGTCCACTCGGATGCTTGGCTCAGGTTATTGCCAAATTTGGCACTAATCCATCAAAGCTTGATGAACTAGGATGTGTTCATTCACACAACCAAGCGGCTAAAACATTTAATCTTCNGCTGCAAGCTTTCTGCAGCAAATTGCAGGGCCAGTACCCAGATGCAAATGTTACATATGTTGATATATTTACCATAAAATCAGACCTCATTGCAAACTATTCTAAATATGGGTTTGCACAACCCATTATGGCTTGTTGTGGATATGGAGGTNCACCATTGAACTATGACAGCCGTGTTTCCTGTGGGCTAACAAAGATCTTGAATGGGACCACAATTGCAGCAAAAGGTTGCAATGATAGCAGTGTGTATGTTAACTGGGATGGGATTCATTACACTGAGGCTGCAAATCAATATGTGGCATCACAAATTCTCACTGGAAATTACTCCAACACTCATTTCTCAGACAAGAAGATGCCCTTCCTTCTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	726571	728776	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000141.1	PF00657.17	Lipase_GDSL	31	388	1.30E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.339
SRR1783600	control	1.246
SRR1783602	moderate drought stress	0.282
SRR1811619	moderate drought stress	0.287

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.448
DRR006520	Root Summer glycyrrhizin high producing strain	2.286
DRR006521	Root Winter glycyrrhizin high producing strain	0.140
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	1.810
DRR006524	Root Summer glycyrrhizin low producing strain	1.944
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.202
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.233

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.918
SRR2868004	Drought Stress (root)	1.925
SRR2967015	Control (root)	1.247

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.184
SRR9715740	Leaf	0.078
SRR9715741	Leaf	0.111
SRR9715739	Root	0.155
SRR9715742	Root	0.734
SRR9715743	Root	0.269

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.149
SRR8749028	MeJA induced 9h	0.061
SRR8749029	MeJA induced 9h	0.291
SRR8749030	Uninduced	0.060
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.305

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.006
SRR8400027	Control - Root	12.905