Gene detail

Gene detail information of Glyur000001s00000140

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54780.1	6.00E-101	thylakoid lumen 18.3 kDa protein
NR	XP_004495750.1	1.10E-177	PREDICTED: UPF0603 protein At1g54780, chloroplastic-like [Cicer arietinum]
COG	YP_007161415.1	2.00E-26	hypothetical protein Cyan10605_1253 [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q9ZVL6\|U603_ARATH	3.00E-142	UPF0603 protein At1g54780, chloroplastic (Precursor)
trEMBL	tr\|G7I7H7\|G7I7H7_MEDTR	3.00E-171	Thylakoid lumen 18.3 kDa protein {ECO:0000313\|EMBL:AES61313.1}

Sequence

Transcript Sequence

>Glyur000001s00000140.1
CTCTTTCAAGCCAATCCAGGCCACNCAAAATCTGAACCAAATGAGAGAACAGAGAATGATGTGGAAGAGAAGAAGAGCCTCTCCCCATTTGAATCCTTTCCCTGCTCATCTTCCTTCCTCATGGGAACCATTCTCCCTCCCCACTCTCTCTCTCCACCACTCCTCAACATCAAGCCTTCATCCTCTCTACAACCCAAGTCAAATTCTGTCTTCTNCTCAAAACCCATTGTTTCCAGTCTCAAAAAGAACCAAACTTTATCCCTTAATAATAAACCATCCCTGCCTTCATGCACAAGCTGGTTGGTTCACGCTCAACAGGGCCTAGCAGCTCTTGCTATCTCCTTGGCTCTCAACTTCACCCCACTCTTGCACAGTGGCAATGCATTGGCATCTGAATTTGATGTGCTCAACGAGGGTCCACCCAAAGAGTCTTATGTGGTTGACGATGCAGGAGTTCTTAGTAGGGTGACAAGGTCTGATTTGAAGCGGTTACTGTCGGATTTGGAATCAAGGAAGAACATCCACATCAATTTTATTACAGTTCGAAAACTCACGAGCAAAGCTGATGCATTTGAGTATGCTGACCAAGTTTTGGAGCGTTGGTATCCTTCTGTGGAAGAAGGGAATGACAAGGGTATTGTGGTTCTTGTCACCAGTCAGAAAGAAGGAGCAGTCACTGGTGGACCGGCTTTCGTCCAAGCCGTAGGGGAGAATATCCTTGATGCCACCGTGTCGGAGAATCTTCCAGTATTGGCTACGGATGAGAAGTACAATGAAGCTATTTATAGCACAGCTNAACGGCTAGTTGCTGCCATTGATGGGCTTCCAGATCCTGGTGGGCCCCTAGTTAAAGACAACAAACGTGAGTCTAACTTCAAAACCAAGGAAGAGACAGAAGAGAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTCGTTGCATTTGTTGTTCCCATGTTACAGTACTATGCTTATGTAGCCAAAAAATAAGGAAACGGTTATATAAGTAGATCTGTCTTCCAAATTATCACACTTTATAAATTCAGATGTATAATGTGCAGTTGTAACCGTGCTTATGTTACAATTGAGTTTGAGAAATCTGAAGAATAAGATCAGAGTTTTTTAGCTTGTAAATGTAATTCCAAAATACGTATGTTGGATTTATTTTTATATGCCAGCTTTTTATGTAATTGTCAGAAAAAGGGTTATGTTGTCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	724674	726400	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000140.1	PF04536.9	TPM	113	231	8.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.932
SRR1783600	control	3.074
SRR1783602	moderate drought stress	2.010
SRR1811619	moderate drought stress	2.047

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.736
DRR006520	Root Summer glycyrrhizin high producing strain	2.734
DRR006521	Root Winter glycyrrhizin high producing strain	1.817
DRR006522	Root Winter glycyrrhizin high producing strain	1.597
DRR006523	Root Summer glycyrrhizin low producing strain	2.657
DRR006524	Root Summer glycyrrhizin low producing strain	2.785
DRR006525	Leaf Summer glycyrrhizin high producing strain	368.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	357.145

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.434
SRR2868004	Drought Stress (root)	11.707
SRR2967015	Control (root)	6.983

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	356.677
SRR9715740	Leaf	472.822
SRR9715741	Leaf	370.769
SRR9715739	Root	1.824
SRR9715742	Root	2.351
SRR9715743	Root	1.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.379
SRR8749028	MeJA induced 9h	8.504
SRR8749029	MeJA induced 9h	6.350
SRR8749030	Uninduced	4.590
SRR8749031	Uninduced	1.069
SRR8749032	Uninduced	5.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.538
SRR8400027	Control - Root	7.766