Gene detail

Gene detail information of Glyur000001s00000138

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05030.1	1.00E-140	sodium hydrogen exchanger 2
NR	AES61315.2	0	Na+/H+ exchanger 1 [Medicago truncatula]
COG	YP_004574932.1	6.00E-19	solute/hydrogen antiporter [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q56XP4\|NHX2_ARATH	0	Sodium/hydrogen exchanger 2
trEMBL	tr\|G7I7H9\|G7I7H9_MEDTR	0	Sodium/hydrogen exchanger {ECO:0000256\|RuleBase:RU003722}

Sequence

Transcript Sequence

>Glyur000001s00000138.1
ATGGCTCTGTTACAGTTACCCTCACCACTTCATTCTTCAACTTCATTTCTCAGCACAAGCACCATTGTTGCACTCTGCGTATTCTTCACACTCCTCTGCGCTTGCATCATCATTGGCCATCTCNTGGAAGAGAACCGCTGGGCCAATGAATCCATCACTGCCCTCCTTCTGGGGTTGTGTTCTGGAGTGGTGGTGTTGCTGGTGACCAAGTTCCACAGTACCAAGATTCTGATATTCAGTGAAGACTTGTTCTTCCTTTACTTGCTTCCACCAATCATTTTCAATGCTGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAAGAACTTCACCACTATACTTCTGTTTGGAGTCCTTGGGACAGTTATTTCATTCTGTCTCATATCTGTTGGTGCCTTTCTGCTCATTAATAGGATTGGCATGGCTAGCTTGGGCATAAAAGATCACCTAGCCATTGGTGCTATATTGTCAGCAACTGACTCAGTTTGCACATTGCAGGTTCTGAATCAAGATGAAACACCTTTGCTTTACAGCATTGTATTTGGAGAGGGAGTAGTAAATGACGCTACGTCTATTGTTCTTTTCAATTCGGTCCAATCACTTGACTTCAGCAGCATCAATGCTATTACAGCTTTGAAATTGTTGGGGACCTTCCTTTACCTCTTTTTCTCTAGTACTGCCCTTGGCATAGTAGCTGGCCTCTTAAGCGCTTATATTATTAAAACACTTTACTTGGGAAGGCACTCTACAGATCGTGAAGTTGCACTTATGATGTTGATGGCATATTTGTCATACATGATAGCTGAACTTCTGAATCTCAGTGGGATTTTGACTATTTTCTTCTGTGGCATTGTTATGTCACACTACACATGGCACAATGTTACAGGAAGCTCAAGGACAACAACGAAGCACGCCTTTGCAACTATCTCATTCATTGCTGAAACCTTTATATTTCTATATGTTGGCATGGACGCTTTAGACATTGACAAATGGAAAAGAAGCGAAGCCAGCATAGGAACTTCAGTTGCTGTCAGTTCAACATTGATTGCATTAGTTTTGATTGGACGAGCAGCTTTTGTGTTCCCTATTGCAAACATTACAAATTGCATCAAGACAAGAGAGAGTACCAAAATCGAGTTTCGATCACAGGTGATAATATTTTCAAGACCTGAGACAACATCAGCTCAAGACTCTGCATTAATGATCACTTCAACTATAATCGTTGTCTTATTCAGTACTGTGGTGTTTGGTTCCATAACAAAGCCTCTGATTGAGGCTGTGCAGCTAAGGCATTCGAAACCAGCCATGTCTGATTCCAATGANAATCAAGAATATCTGAGATTACTATCCCTTGAAAGCAATGGTGGTTCCATTAACCAAAACAGCAATCAGCCATCTCACAGACGAAGTAGCCTGAGTTTGCTGATACGTTATCCTGCTACTACGGTTCACTACTTTTGGAGGAAATTTGATGATAGATATATGAGACCCATATTTGGTGGAAGGGGTTTCGTTCCGGTTGTTCCTGCTTCACCATCCGGTGTAGAGGAGATTCCTTGAAACAAACAACTTAGCTTCTCTTCACCTACCTTGGAGTGATGATTTTTCCACCATGTTGACAGTTTTTATGAAGAAATCCAATCATATTTTACCATATCATATTTCTTAATATTTGTTTACACTGTAGAAAGATGATGAAATATGATTAGCCATATAGTGTATAGTTATTCTTATTAAAATGTTTCGCGGATATCCAGGGAAAATATTGTAGTCTCCACTTTTATTTCAGAGTTTGCACCTATAAAAAGGTACTTGTACGAAGGAACAATACTTCAAAGAAGGGTTTGTTTCGTACACAAAAGGGAAAACCTCAACGAAAACAATCCTCCTTCTCTATCTAAATATATAATTTAAATTTTAATGTGAGGAGATAACATGTTCTAAGGGGACTGCGCAGGGGAATAGTTTTTCTGAGGTTTCCCCACCATGGCTCATGGTGTAACTAGATTAGTAATTCTGCTACCCCAAAAATAAATTACAAGATTCATCAACTATGGAAAAGCCCTCTTATCTTGGAGATGCTCTTATGTTTGTAAACGGATTTTCCACTANTGCTTATTGACCGATGTCTAATACTGATCTTGTCACAGTAGTTTATCCCTTTGTGGCATATTGTTTCTGAGGAAGGGCTCTCCAACCAATATCCCGACGATAGAAGCCCCCTGGCCAGTTAATATTCTCAACAGCAAGATAAGCTCGATCACATGCCTCTTCAAGATCATTTCCCTTGGCAGTGACCCCAAGAACACGCCCCCCAGTTGCAATAAATCTCCCTTCAGAGTCAAAAGCAGTTCCAGCATGGAATATCTTGACACCTGGAGCAACAAGCTCGGCTTCTTCAAGGTTTTCAATCAACGTTCCCTTCTCATATGATCCCGGATATCCCTTACTTGCCATTACCACAACCATTGCAGACCCGGGAGACCAGTTCAGTGATACCCCACTCAACTCTCCCCTGCAAGCTGCAAGCAGAACTTGTACCAAATCAGACTCCAACCGAACCATCAAGACCTGTGTAAAATTCCAAAAGGAAAATTGATATGCATCAGTTAAAATGACTTCAATATTATTAACATAGAGCATATTGTTAATGTGATCATTCCATTATCAAAGGTTGTACCCCTTGTGTTTNGTAAATAAACCGATGATTGTTTGTGTGTGTATCTGTTACTCAGATAAGATCAAAGATATCAATGTGAAAGATTATTAAAAAAAGCTCTGAAAGGGTTGGACATCAATTTGTCTAACAGTGGAAATAGCAATTGNCATCAACTTGTGATTTAAAACCAAATAAGAATAACCCCCAAAAAGAAAAATTGCATACCTTTTGAATTAAAAACTATACATATCACACCATTAACATGACCTCAAACATATCAAAACCATCAACTGTGCTCTGTGCATAAATGAGAACTAAGGATTCCTGAAACAATTATTGTCACTAATGCCTTCTGAGTTCTATCCTGTTATAGTGTATTTCAACTTTCAAGGGTTAAGTACTTATATTGGAAACTGCATCGTATGACTTAACTGACCTGGCACTCTGGATCACCAAATCGCACATTATACTCAATTAACTTAGGCATGCCAGACTTCCTCTCAATCATAAGCCCGGCATACAAAACCCCAACAAACTTGCAACCTTCTGTTGACATTCCTTTTACTGTTGGCATGATAATAGAATCCATTACTATAGATTGAAGTTCCTTGGTTAATATAGGAGCAGGAGAGTATGCACCCATGCCACCAGTATTTGGCCCTGTGTCACCATCACCAACTCGCTTATGGTCCTGAGCAGATTCTAGTGGAATTGCATTTTCTCCATCAACCAATGCAAAAAATGACACTTCTTCTCCTTCTAGAAACTCCTCAACAATGACACGACAACCTGCAGAACCAAAATCACCCTTCACTAGCATTGAATCAACAGCTTCATATGCTTCTTCCAGTGTCATGGCAACAGTAACTCCTTTTCCAGCAGCCAGTCCATCTGCTTTGATAACAATCGGTGCTCCTTGTTCTTGAATATATTGCTTTGCAGCAGATGGGTCTGTAAACGTTTTGTACTGCACTAATAAGTCCATGATCAGTAAAAACTGTGAGAAAATTCTGGAAGCAAAATTGATATAAACAAGGTCAAAAGAAGATAGAGGCAGGCNTATATATTCATATTCAAGGAGTGAAGGAGAGCAGGGAAGAACAACATATACATGGAATTGAAAGAAAAATAAGGGCACAAACATGATGACTCCATTAATTATCATATGCATCATTTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	713525	719550	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006814 sodium ion transport

GO:0006885 regulation of pH

GO:0009651 response to salt stress

GO:0055075 potassium ion homeostasis

GO:0055085 transmembrane transport

cellular_component

GO:0005774 vacuolar membrane

GO:0005886 plasma membrane

GO:0016021 integral component of membrane

molecular_function

GO:0015299 solute:proton antiporter activity

GO:0015385 sodium:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000138.1	PF00999.16	Na_H_Exchanger	34	424	4.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.517
SRR1783600	control	1.664
SRR1783602	moderate drought stress	1.987
SRR1811619	moderate drought stress	2.042

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.612
DRR006520	Root Summer glycyrrhizin high producing strain	3.630
DRR006521	Root Winter glycyrrhizin high producing strain	10.374
DRR006522	Root Winter glycyrrhizin high producing strain	10.371
DRR006523	Root Summer glycyrrhizin low producing strain	5.865
DRR006524	Root Summer glycyrrhizin low producing strain	5.824
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.593
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.612
SRR2868004	Drought Stress (root)	3.355
SRR2967015	Control (root)	3.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.221
SRR9715740	Leaf	5.551
SRR9715741	Leaf	5.801
SRR9715739	Root	1.485
SRR9715742	Root	2.737
SRR9715743	Root	2.583

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.194
SRR8749028	MeJA induced 9h	21.599
SRR8749029	MeJA induced 9h	17.797
SRR8749030	Uninduced	6.174
SRR8749031	Uninduced	3.182
SRR8749032	Uninduced	3.460

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.263
SRR8400027	Control - Root	4.284