Gene detail

Gene detail information of Glyur000001s00000137

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09830.1	0	Glycinamide ribonucleotide (GAR) synthetase
NR	XP_007144756.1	0	hypothetical protein PHAVU_007G182100g [Phaseolus vulgaris]
COG	YP_005030703.1	1.00E-167	phosphoribosylamine-glycine ligase [Azospirillum brasilense Sp245]
Swissprot	tr\|P52420\|PUR2_ARATH	0	Phosphoribosylamine--glycine ligase, chloroplastic (Precursor)
trEMBL	tr\|V7BGW3\|V7BGW3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW16750.1}

Sequence

Transcript Sequence

>Glyur000001s00000137.1
TACTCTCAAACTCTCAATTCAATTCTGAAACTATAATCTTGCAGCGGTGCAGCCTTGGCACCACATTCCCCATTCTCAGTGTAGTGTTGTGCCTTTAAAAGCTTTTGGGTGTTTCAAGCCACTGTTTCCTTTTCTTTTTATTTTGTTCTCTCTGACTCTAAGTATCCTTTATTCAAAACTCTTGTTAATCCGCACGCCCACTAAGCCAAGACGTCAACTTTTAGTGTTATAAGCACACAAACTGTTTGATAAATTGACTAAACAGGTTTCTTGGCTAAAATCCAAGTTGCAATTATACGGGGCCACAAGTCAAGAGTGCTGCCTTTGATTTTTTAAGTGGAGTAGTATGTCTTGCGCCACCTTCAATGTTGGAACTTCTTTACATCTTCATGGAGGCTCTAAGCATGGAGTTTCTAAGCCATTTGGGTTCAGACACCACTGTAGTTTCCACAAGTCTTCTACTCTCTTCCTTGAGACCTTGAATTTGAGCTCTACTGATCATAGTTTTAGCCNGGCTACACGCTCACGGTCATTCCATAGTGCTTTCAAATGTGCTGCTCAGGATTCAGAGCCATCAGCTTCTGTTGGCGTTGAGACAAAGAAGAATTCTCACGAAAGGGTGGTTGTTCTGGTNATTGGTGGAGGGGGACGTGAACATGCACTTTGCTATGCCTTGCAACGATCACCGTCCTGTGATGCTGTATTCTGTGCCCCTGGCAATGCAGGAATTGCCAGCTCAGGAAATGCCACTTGCATCTCAGACCTTGATGTTTATGATGGAGCAGCAGTAATCTCATTTTGCTGGAAATGGGGGGTTGGTCTAGTTGTTGTGGGACCCGAGGCTCCACTTGTTGCAGGCCTTGCAAATGATTTAGTTAAGGCTGGAATCCCAACTTTTGGCCCATCTGCAGAGGCTGCTGCTTTAGAAGGTTCTAAGAATTTCATGAAGCATTTGTGTGACAAGTATGATATTCCAACTGCCAAGTACAAAACGTTTACAGACCCATCTGCTGCAAAGCAATATATTCAAGAACAAGGAGCACCGATTGTTATCAAAGCAGATGGACTGGCTGCTGGAAAAGGAGTTACTGTTGCCATGACACTGGAAGAAGCATATGAAGCTGTTGATTCAATGCTAGTGAAGGGTGATTTTGGTTCTGCAGGTTGTCGTGTCATTGTTGAGGAGTTTCTAGAAGGAGAAGAAGTGTCATTTTTTGCATTGGTTGATGGAGAAAATGCAATTCCACTAGAATCTGCTCAGGACCATAAGCGAGTTGGTGATGGTGACACAGGGCCAAATACTGGTGGCATGGGTGCATACTCTCCTGCTCCTATATTAACCAAGGAACTTCAATCTATAGTAATGGATTCTATTATCATGCCAACAGTAAAAGGAATGTCAACAGAAGGTTGCAAGTTTGTTGGGGTTTTGTATGCCGGGCTTATGATTGAGAGGAAGTCTGGCATGCCTAAGTTAATTGAGTATAATGTGCGATTTGGTGATCCAGAGTGCCAGGTCTTGATGGTTCGGTTGGAGTCTGATTTGGTACAAGTTCTGCTTGCAGCTTGCAGGGGAGAGTTGAGTGGGGTATCACTGAACTGGTCTCCCGGGTCTGCAATGGTTGTGGTAATGGCAAGTAAGGGATATCCGGGATCATATGAGAAGGGAACGTTGATTGAAAACCTTGAAGAAGCCGAGCTTGTTGCTCCAGGTGTCAAGATATTCCATGCTGGAACTGCTTTTGACTCTGAAGGGAGATTTATTGCAACTGGGGGGCGTGTTCTTGGGGTCACTGCCAAGGGAAATGATCTTGAAGAGGCATGTGATCGAGCTTATCTTGCTGTTGAGAATATTAACTGGCCAGGGGGCTTCTATCGTCGGGATATTGGTTGGAGAGCCCTTCCTCAGAAACAATATGCCACAAAGGGATAAACTACTGTGACAAGATCAGTATTAGACATCGGTCAATAAGCANTAGTGGAAAATCCGTTTACAAACATAAGAGCATCTCCAAGATAAGAGGGCTTTTCCATAGTTGATGAATCTTGTAATTTATTTTTGGGGTAGCAGAATTACTAATCTAGTTACACCATGAGCCATGGTGGGGAAACCTCAGAAAAACTATTCCCCTGCGCAGTCCCCTTAGAACATGTTATCTCCTCACATTAAAATTTAAATTATATATTTAGATAGAGAAGGAGGATTGTTTTCGTTGAGGTTTTCCCTTTTGTGTACGAAACAAACCCTTCTTTGAAGTATTGTTCCTTCGTACAAGTACCTTTTTATAGGTGCAAACTCTGAAATAAAAGTGGAGACTACAATATTTTCCCTGGATATCCGCGAAACATTTTAATAAGAGTAATGATACATAGACACCTCAACAGTGTCACCACCCATCCAACACCTCTTATCTCTTTCTATCTCTCTCTTATTGTCACATCATATTACCTATCACATCTATCACTTCTCTTTCTTCTATCTCTTTCTCTCTCCAGGTGTATACACCCATTGAGGTGTCCATGAAACATTTTCCTTTTAATAAATATAACTATACACTATATGGCTAATCATATTTCATCATCTTTCTACAGTGTAAACAAATATTAAGAAATATGATATGGTAAAATATGATTGGATTTCTTCATAAAAACTGTCAACATGGTGGAAAAATCATCACTCCAAGGTAGGTGAAGAGAAGCTAAGTTGTTTGTTTCAAGGAATCTCCTCTACACCGGATGGTGAAGCAGGAACAACCGGAACGAAACCCCTTCCACCAAATATGGGTCTCATATATCTATCATCAAATTTCCTCCAAAAGTAGTGAACCGTAGTAGCAGGATAACGTATCAGCAAACTCAGGCTACTTCGTCTGTGAGATGGCTGATTGCTGTTTTGGTTAATGGAACCACCATTGCTTTCAAGGGATAGTAATCTCAGATATTCTTGATTNTCATTGGAATCAGACATGGCTGGTTTCGAATGCCTTAGCTGCACAGCCTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	711427	716279	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01945	purD	EC:6.3.4.13	Purine metabolism	map00230
			Purine metabolism	map00230

Gene Ontology

biological_process
GO:0009113 purine nucleobase biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0004637 phosphoribosylamine-glycine ligase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000137.1	PF02844.10	GARS_N	94	194	1.30E-31
Glyur000001s00000137.1	PF01071.14	GARS_A	195	389	3.90E-84
Glyur000001s00000137.1	PF02843.11	GARS_C	424	519	2.40E-28
Glyur000001s00000137.2	PF02844.10	GARS_N	94	194	1.30E-31
Glyur000001s00000137.2	PF01071.14	GARS_A	195	389	3.90E-84
Glyur000001s00000137.2	PF02843.11	GARS_C	424	519	2.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.060
SRR1783600	control	4.098
SRR1783602	moderate drought stress	4.991
SRR1811619	moderate drought stress	4.664

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.587
DRR006520	Root Summer glycyrrhizin high producing strain	6.987
DRR006521	Root Winter glycyrrhizin high producing strain	21.924
DRR006522	Root Winter glycyrrhizin high producing strain	20.189
DRR006523	Root Summer glycyrrhizin low producing strain	11.079
DRR006524	Root Summer glycyrrhizin low producing strain	12.597
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.619
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.229

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.042
SRR2868004	Drought Stress (root)	6.531
SRR2967015	Control (root)	6.519

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.712
SRR9715740	Leaf	7.911
SRR9715741	Leaf	7.114
SRR9715739	Root	3.197
SRR9715742	Root	4.918
SRR9715743	Root	4.960

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.535
SRR8749028	MeJA induced 9h	43.792
SRR8749029	MeJA induced 9h	24.537
SRR8749030	Uninduced	9.611
SRR8749031	Uninduced	4.561
SRR8749032	Uninduced	6.316

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.050
SRR8400027	Control - Root	6.383