Gene detail information of Glyur000001s00000135 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27410.2 | 0 | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein |
| NR | XP_006577254.1 | 0 | PREDICTED: amino acid aminotransferase isoform X2 [Glycine max] |
| COG | YP_006417869.1 | 5.00E-98 | branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Aequorivita sublithincola DSM 14238] |
| Swissprot | tr|Q9ASR4|BCAL2_ARATH | 0 | Branched-chain-amino-acid aminotransferase-like protein 2 |
| trEMBL | tr|I1JRF2|I1JRF2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G40000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 697711 | 708009 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000135.1 | PF01063.14 | Aminotran_4 | 307 | 546 | 1.80E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.537 |
| SRR1783600 | control | 43.860 |
| SRR1783602 | moderate drought stress | 26.735 |
| SRR1811619 | moderate drought stress | 26.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.947 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.566 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.011 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.891 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.875 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.991 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 52.191 |
| SRR2868004 | Drought Stress (root) | 47.348 |
| SRR2967015 | Control (root) | 44.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.688 |
| SRR9715740 | Leaf | 30.603 |
| SRR9715741 | Leaf | 29.850 |
| SRR9715739 | Root | 4.235 |
| SRR9715742 | Root | 22.368 |
| SRR9715743 | Root | 21.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.808 |
| SRR8749028 | MeJA induced 9h | 10.881 |
| SRR8749029 | MeJA induced 9h | 17.169 |
| SRR8749030 | Uninduced | 4.482 |
| SRR8749031 | Uninduced | 2.658 |
| SRR8749032 | Uninduced | 4.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.281 |
| SRR8400027 | Control - Root | 43.340 |