Gene detail

Gene detail information of Glyur000001s00000128.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54820.1	5.00E-131	Protein kinase superfamily protein
NR	XP_003591076.1	0	Protein kinase 2B [Medicago truncatula]
COG	YP_001958461.1	1.00E-35	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q0WRY5\|CDL1_ARATH	2.00E-100	Serine/threonine-protein kinase CDL1 {ECO:0000305}
trEMBL	tr\|G7I806\|G7I806_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES61327.1}

Sequence

Transcript Sequence

>Glyur000001s00000128.1
CTGTCCTCCTAGGAAATTAAGGAGAGGCTCAAAAACTAGAAAAATACTTACTTGCATCCCCCATTGTTTTTGTTCACTACTATAAACAAATTAAAACTCCTCTCCCATACCCTCTCTTACTTCTATGCCTTCCCATCTCAACNTTGTTTTACACTTCCTCAAACAGAAAGCCATTTAATTTCATTTTATCCTTGGTTTGCTCTGTGGTCACCCATGGAAGTTAATACTACCACTACCACCATTGTACCTACAGGGCCACCTACTGCTGCTACAAAGAACCCTACTTTCACACGGCACCACTTGCATTCAGAAAAACATAACCATACCCATGATGACCATTTCCCCTTCAAAACCGTTCTCATAACCGTAGCAGTGGCCGCCTTTATCACTGTCCTATTTATCATCTTCCTTGTTGTGTGCTTCATCCGTCGGCANAAGTCTTCCAGCAGCAAGAATAATGGGACTTGCAAAGATGACAGTAGTAGATCAGTGCTTCATCACACCAGCAGCAGGCTCATCACTTCAACAATGTTGAACTTTAATNCTAGCCCAGATGTGAAAGGTGGGTGTCTTCATGGGGGAAATTTGAGCAGGACACCAGCACCTAAATTTAGAGGGGTCCAAGTTTTCACGTATAGGGAACTAGAAGTTGCCACGGATGGATTCAGCGAAGCAAATGTGATTGGCAATGGAGGGGATGGTTTGANGTATAAAGGAGTCCTAAGTGATGGCACTTTGGCAGCAATCAAGTTGCTGCGCAGTGAGGGTAAGCAAGGAGAGCGTGCCTTCAGAATAGAGGTCGATCTCCTCAGCCGGCTGCACTCTCCCTATTTGGTGGAGTTATTAGGCTATTGTGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCAATGGCACACTCCAGCACCATCTCCATTCCCCCAACGACCAAACTCAGCCGTTGGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCCAGGGCACTGGAGTTCCTTCATGAACATGCAGTCTCACCCGTGATCCACCGAGACTTCAAGAGTAACAATGTTCTACTGGATCAAAATTTCCGTGCCAAGGTGGCAGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAGAAACGGACAGGTTTCCACCCGTGTGTTGGGGACCACTGGATATCTAGCACCAGAGTACGCCTCCACAGGTAAGCTTACTACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTGCTAACCGGACGTGTACCAGTTGATATTAAGCGGGCCCCTGGAGAACACGTCCTGGTCTCTTGGGCTCTTCCAAGGTTGACAAACAGAGAAAAAGTGATGGAAATGGTTGACCCAGCTCTACGTGGACAGTACTCGAAGAAGGATTTAATTCAGGTAGCTGCCATTGCAGCAATGTGCATACAACCAGAAGCTGATTACAGGCCACTCATGACAGATGTTGTACAATCACTGGTACCACTTGTCAGGAATCCATCTTCTCTTGGTTCATCCAGTTCCCTAAGATTTCATAAACAAATACCTAGACTAAGTCATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	646489	649587	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000128.1	PF00069.20	Pkinase	154	422	3.70E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.711
SRR1783600	control	2.720
SRR1783602	moderate drought stress	2.860
SRR1811619	moderate drought stress	2.833

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.008
DRR006520	Root Summer glycyrrhizin high producing strain	0.035
DRR006521	Root Winter glycyrrhizin high producing strain	0.970
DRR006522	Root Winter glycyrrhizin high producing strain	1.013
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.070
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.828

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.214
SRR2868004	Drought Stress (root)	3.127
SRR2967015	Control (root)	3.562

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.207
SRR9715740	Leaf	6.023
SRR9715741	Leaf	10.292
SRR9715739	Root	0.575
SRR9715742	Root	1.032
SRR9715743	Root	1.541

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.631
SRR8749028	MeJA induced 9h	5.356
SRR8749029	MeJA induced 9h	3.647
SRR8749030	Uninduced	0.820
SRR8749031	Uninduced	0.635
SRR8749032	Uninduced	0.451

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.683
SRR8400027	Control - Root	1.429