Gene detail

Gene detail information of Glyur000001s00000124

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24960.2	3.00E-117
NR	KDO59522.1	0	hypothetical protein CISIN_1g002555mg [Citrus sinensis]
trEMBL	tr\|A0A067F7P9\|A0A067F7P9_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO59522.1}

Sequence

Transcript Sequence

>Glyur000001s00000124.1
ATGGGGAGCCAGATACCTAGAGGCGTTGACCCATCGGGGACAAATTGGACTCCTGCAATGGAAAGCTATTTCGTTGGTCTATTGTTGGATCAGGTGCATAGGGACAACAGGATGGGCTATACTTTCAACAAACAAGCTTGGAATGAAATGCTGGCCTCGTTCAATGCTCACTTTGGGTCTCCTCATGATGTAAAACTCCTCAAGAATCATTACACGGCTCTGTGGATGCAGTTCAATGACATAAAGAATCTTCTTGACCAAAATGGATTCTCTTGGGATGAGACTAGGCAAATGGCACACCCTCATGCACAAGCCTACAGAAGTAAAGAACTGGCAAACGTTAAAGATTTGTGTTTGATATATGCACATAAAAGTGCAGATGGGAGATNTAGCTTGTCAAGTCATGATATGGACTTTGGTGATGATGATCAAGTGGTGAATACTGGTAATGGAATTGGGGCCAGAACACCAGCCCCGGTTACCAGAAAATGCCCAGATACAGACTGGACGGTAGCAATGGACTGTTATTTTGTGAAGCTTATGTTGGACCAACTTAAACATGGCAATATGATTCGTAATACGTTCAGCAAAAAAGCATGGAACCATATGCTTAAGTTCTTCAACCAAAAATTTGATGCTCAGTATGATACAATATTCTTAAAACATCGTTACAATAAACTTGGGAATCGCTATGCTGATATAAAAAATCTACTNGAATTAAAAGATTTTTCATGGGATGAAAACCAACAAAGGATTGTTGCTGATGATTATGTTTGGGACAACTACATCAAAATTTTACAACGAAGTGTTTATGCACACCCACATGCAAGATACTATAGGAACAAGACCTTGGTTAACTACCAAGACTTGGGGTTAATATATGGCAATGCTAGGTGCAAACAGGAAGGTAAAAACAATAAGGAGTTGATGAGGACACCCAAGACTGATAGATTGGACACCTTCCATGGCCGTTATCTCATTGACTTTATGCTAGAGGAGGTTCGAAGTGGGAACAAGATTGATTATGTTCTCAACAATCAAGCTTGGTCAGATATGGTTGTATTGTTCAAGGAAAGATTTGGTATACAATTTGACAAAGACCACCTCAAGCANTGTTGCAAGTGTTTAGAAAAGTTATACTATGACATGAGAAGTCTTCTTGAACAGAAGGGGTTCTTGTGGGATGAAACACGGCAAAANATCACTGCATATGATAGTGTTACTGTTTGGGATGCTTATGTTATGGAACATCCTGATGCAAATTCTTACAGAAATTATCGGAAGCCAAATTATAATGATCTATGCTTGATTTATGGAAATTCAGATATTGAGTTGACATGTAACCTAGCTAATCAAAACATTGGATACAATGATTGCAGAGTCAAATTTCAAAATTTTCACTNGAAAAGTGTCTGGACACCACCAATGGATCGGTATTTTATGGACTTGATGTTAGAGGAAGTGCGCAATGGAAGCATGGTTTATCATAAATTTGACAGATTAACCTGGAGGAATATGGTGGCAAAATTTAGCGCAGAGTTTGGGCCCCAGTTTGATAAAAATGTCTTAAAAAGTTGCTATATGACTTTGAGAAAGAGATTCAATGATATGAAGGTTCTGCTAAACCAGCATGGGTTTGCCTGGGATGAAATGCAGCAGATGATAACAGCTGACGAAAGACTGTGGGATGCTTGTGTGAAGGAGGACCCTGATTTAAATGCATACCGCAATAGAACTCTTCCAAATTTCAATGATTTATTTATGATATATGAATATACAAACTNTGACAGAAATGAACACTATTCTGGCTGCTCTGAAGGTTCCAAGGATAATAAACCGAGTACTGTTGTTGGGGAGTACAACCATTCACCTGCTAATGATGAACCTATGAGGATAGCTTGGACAGTGAAAATGAACCATTATCTGATCGGCCTTTTACTGGAGCAGTTGAATAGAGGAAATAAGATTGGTGATACATTCAGTAAGAAAGCTTGGTCCAGAATGACTGCATCATTCAATAAAGTGTTCGGACTACTTTGTGACCGAGATGCACTAGAAAATTGGTATTTTGGTCTCATGAGAGTCTACAAGGATGTCACATATCTTCTGAATCAGAATGGCATTGCTTGGGATGAAATTCAGCACACTTCAAGTGCAAATGATAATAGAATACCGGGTTGTGTGAGAATAAAGTTAAAGAAGTATAATTTTGGGATGGAGACTAGCAAAATGAGGGGAGAGCTGCAATCTTCGGCTAGGGAGTTTAAAATAGCTGATGGGAGAAAAAGGCGAAAATCTCAAGCTGTGTTGACTTCCTCAAGTGCTAGAAAAGCTCAAAAAACCTTACTAGGCGAGACGCAAGACAATTTGGAAGAGGGAAAAGACAACTCAATAGAACGCATTGTTGCTGCTCTTCAAACTGTACCAGACTTGGATGATGAGCTCTTCTTGGAGGCTTGTTTACTTCTAGAAGACGAAAGGAAGGCTAGGATGTTTGTGGCAATGGATTCAACCGCAAGAAGAAATTGGTTGCNTAAAAGACTTCACCGCTTAGATTTTGTGGGAAATCTCTTGAACAATTTACGAATTACGGAAGCTAAGAGAAGCGCAGCACTAATATGTTTGGATTGGGTCACTAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	620175	625478	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000124.1	PF12776.2	Myb_DNA-bind_3	15	98	3.30E-19
Glyur000001s00000124.1	PF12776.2	Myb_DNA-bind_3	168	262	3.60E-21
Glyur000001s00000124.1	PF12776.2	Myb_DNA-bind_3	321	413	2.10E-18
Glyur000001s00000124.1	PF12776.2	Myb_DNA-bind_3	472	564	1.70E-21
Glyur000001s00000124.1	PF12776.2	Myb_DNA-bind_3	634	721	9.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.145
SRR1783600	control	5.249
SRR1783602	moderate drought stress	4.900
SRR1811619	moderate drought stress	4.831

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.776
DRR006520	Root Summer glycyrrhizin high producing strain	6.177
DRR006521	Root Winter glycyrrhizin high producing strain	2.713
DRR006522	Root Winter glycyrrhizin high producing strain	2.615
DRR006523	Root Summer glycyrrhizin low producing strain	4.973
DRR006524	Root Summer glycyrrhizin low producing strain	5.018
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.574

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.437
SRR2868004	Drought Stress (root)	10.516
SRR2967015	Control (root)	9.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.645
SRR9715740	Leaf	2.720
SRR9715741	Leaf	2.574
SRR9715739	Root	0.205
SRR9715742	Root	1.343
SRR9715743	Root	1.587

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.014
SRR8749028	MeJA induced 9h	5.014
SRR8749029	MeJA induced 9h	2.905
SRR8749030	Uninduced	4.138
SRR8749031	Uninduced	2.678
SRR8749032	Uninduced	2.563

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.043
SRR8400027	Control - Root	7.653