Gene detail information of Glyur000001s00000118 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10250.1 | 5.00E-63 | Phototropic-responsive NPH3 family protein |
| NR | XP_003591087.1 | 0 | BTB/POZ domain-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9FMF5|RPT3_ARATH | 2.00E-99 | Root phototropism protein 3 |
| trEMBL | tr|G7I817|G7I817_MEDTR | 0 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:AES61338.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 606751 | 609243 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000118.1 | PF03000.9 | NPH3 | 268 | 507 | 8.30E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.523 |
| SRR1783600 | control | 0.522 |
| SRR1783602 | moderate drought stress | 0.431 |
| SRR1811619 | moderate drought stress | 0.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.240 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.284 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.060 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.058 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.296 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.708 |
| SRR2868004 | Drought Stress (root) | 0.562 |
| SRR2967015 | Control (root) | 0.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.706 |
| SRR9715740 | Leaf | 6.322 |
| SRR9715741 | Leaf | 7.437 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.352 |
| SRR9715743 | Root | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.090 |
| SRR8749028 | MeJA induced 9h | 0.074 |
| SRR8749029 | MeJA induced 9h | 0.034 |
| SRR8749030 | Uninduced | 0.095 |
| SRR8749031 | Uninduced | 0.170 |
| SRR8749032 | Uninduced | 0.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.822 |
| SRR8400027 | Control - Root | 1.375 |