Gene detail

Gene detail information of Glyur000001s00000114

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08980.1	2.00E-144	amidase 1
NR	XP_004495736.1	0	PREDICTED: amidase 1-like [Cicer arietinum]
COG	YP_003695504.1	9.00E-83	amidase [Starkeya novella DSM 506]
Swissprot	tr\|Q9FR37\|AMI1_ARATH	0	Amidase 1
trEMBL	tr\|G7I823\|G7I823_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK47351.1}

Sequence

Transcript Sequence

>Glyur000001s00000114.1
TGAAGGAATGATATGAAAAATAAAATAAAATGTCTTAATTAGTAGAATATAAAGTATAGGACAAAAACAAAATTGGTAGGTGGTTGTGTGACTCATTTTTGGATTGGCCAATCAAAATATGATGTTGGCCTTATCCTCCTCATATGAATCACACGAGCAATAAAATTTCACCAGACATGAGAAGCTCTTTACTTTAATCATTGTAACCCACAAAACGAGGGAAGAGTCCCTGCTGTTCTGAATTAGCATCATCATCATCATCATCATCATCATCTGTGGGTGGCTGAAAACGCAAGACAGGAGCTTTGCAATTGCTACAGACATGGAAACAGACTCAGATTATGGAGCATTCATGGAGAAATTCATTTTACCACCAACTTCTTCTTCACCTGATCTTCCTTTGAATTCACTTACCTTTGCAGTCAAAGACATATTTGATGTCGGAGGGTATGTAGCTGGATTCGGGAATCCTGACTGGGCAAGGACTCATCCGGTTGCTACTTCTACTGCACCAACAGTTTTGGCTCTCCTCAGTGCAGGTGCCACTTGTGTTGGTAAAACTGTCATGGATGAAATGGCTTACAGTATAAACGGAGAGAATATACATTATGGCACGCCTAGAAATCCATGTGCAGAAGATCGAGTTCCTGGAGGATCTTCTAGTGGCTCTGCTGTTGCGGTTGGTGCAGTGCTTGTGGATTTCTCAATAGGAACTGATACCGGAGGAAGTGTGAGAGTGCCTGCATCATATTGTGGGATTTTCGGTTTTCGTCCTTCTCATGGTTCTGTCCCAACAGCAGGAGTTATTCCTATGGCACAAAGTTTTGATACTGTGGGATGGTTTGCTAGGGATCCAATGATTTTGAGCCGAGTTGGACACGTACTTCTGCAATTGCCAGACGTCGAACCTGTTAGACCTACTCACATTGTCATTGCAGATGACTGTTTTCAGCTTTCAACCATTCCATATGATGCAGTTACACGAAGTATCATCAAAGTTTCAGAGAAGTTATATGGAGGGGATGTATTAAGGCATGAAATCCTTGGAGAGTATGTGAAGGCCAAAGTTCCGAGTTTGAAGCATTTCATGAGTAAAGAGATTACAGACCAAGTATATAACATTCCATCACTGGCTGCACTTTCAAGTGCCATGCGGTTGCTTCAGAGGTATGAATTCAAGAATAACCATGGCGAATGGATCAANGCGGTCAAACCCAATATAGGTCCTGGAATTTCAGAACGTGTATCAGAAGCACTAAGGACAACTGGGGAGGACATTGATATCTGTCATTCTATAAAAGGGGAGTTGCATGATGCTCTTTCTGCTCTTCTTGGGGATTATGGTGTTCTCATGATCCCCACAGTTCCAGGGCCTCCACCTAAACTACAAACAAATCCATCTGAATTAGAAGTTTTTCGTGCAAGGGCTTTTAGCCTGCTGTCCATTGTTGGTGTATCTGGATTTTGCCAGGTAAGCATACCACTAGGGATGTATAATAAACTCCCTGTATCAGTTTCTCTGGTGGCTAGGCATGGTGCAGATAGATTTTTGCTTCACCTTGTTCAGAGTCTTTTTGATAACACTGAAAAATAGCAGAGCACAAGTTACTTTACTGTGACTGCAACAATGCCATTGTAATGTAGTAATTTTATTTTTTTTTAACTCAAATTGAGGCAAAGAAATTTTATGGATTGGAAGTTTAGACTTTAGAGAGCTTCTGAGCAATTGACATATTTTAAATTTTTTTTTGGTCAATGACATATTTTAATTTAGCCCCTCCTTTTATCTAGTGATGGGCCGCTCGGTATGGGCCTACCTGTGAAGCTAAANACTAGATCCTAATGCTACGATTAAACCACGTACAAGCATAATCATGCCACAACAGAGAAATACTACACCCAGTAGGAGGCGAACGAAACACATGGAGAGAATGGGCAAAGCCCGCGAGCCAATCTGCGACCTGATTGGACTCTCTGAAGATGTGATGGAAAGCAACACGCCACTGACGCCCGAGAAACTNATGGATCTGACTTACCAACCGGTAACAAGGATGGGTTTGAGGGCAAGAACCAGTAATGAGCTGAACCGCGACCAAAGAGTCTGACTCCATAATTAATAAGCTGTCTACTGCCATTAGTCCATGCCAACTCCAGGCCAGGGATGTAAGGATGCCCCAAAGCTCCGCCATAAGGACCGAACAAGTGCCCAACCGCTGGGAGAAGCCACCGCCCATATGAATCCCGAAGAACACCGCCACAAGTCGCAACGCCATTCCCAGCCAAAGAACCATCCGAATTGCACTTAGTCCATCATCCATCAGGTGGGAATTATGCTTATGAACATGGGCAATTATGCTAGCCGGCCACGTTGAAAGTTTCTCCAGCAAACACATGTTTGTTCCTATGGTGCCATATGGCTGAAATAATATAATAATCCCAAAAAGACGATGCCAAGAGGGGTCATTATCAGCAATTGGCACCAAATTATGGAGGAGCCACTGGCGTAAGGGAAGCCCAAAAGAGGCCTGATTAGAATGAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	598366	602848	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000114.1	PF01425.16	Amidase	22	177	1.10E-52
Glyur000001s00000114.1	PF01425.16	Amidase	297	411	5.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.322
SRR1783600	control	5.360
SRR1783602	moderate drought stress	6.792
SRR1811619	moderate drought stress	6.680

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.659
DRR006520	Root Summer glycyrrhizin high producing strain	12.471
DRR006521	Root Winter glycyrrhizin high producing strain	7.808
DRR006522	Root Winter glycyrrhizin high producing strain	7.438
DRR006523	Root Summer glycyrrhizin low producing strain	7.676
DRR006524	Root Summer glycyrrhizin low producing strain	7.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.247

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.962
SRR2868004	Drought Stress (root)	9.717
SRR2967015	Control (root)	10.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.756
SRR9715740	Leaf	24.035
SRR9715741	Leaf	19.538
SRR9715739	Root	3.149
SRR9715742	Root	6.712
SRR9715743	Root	6.089

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.502
SRR8749028	MeJA induced 9h	2.907
SRR8749029	MeJA induced 9h	1.307
SRR8749030	Uninduced	2.866
SRR8749031	Uninduced	1.433
SRR8749032	Uninduced	1.974

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.519
SRR8400027	Control - Root	11.598