Gene detail

Gene detail information of Glyur000001s00000113

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08980.1	6.00E-135	amidase 1
NR	XP_003556503.1	0	PREDICTED: amidase 1-like isoform X1 [Glycine max]
COG	YP_002760551.1	1.00E-76	putative amidase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|Q9FR37\|AMI1_ARATH	5.00E-175	Amidase 1
trEMBL	tr\|I1NIY1\|I1NIY1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G37660.1}

Sequence

Transcript Sequence

>Glyur000001s00000113.1
ATGGAAACANCCTCGGACTATGGTGCATTTGTGGAGGAATTCATCTTACAACCGGATTTCTCACCTACTCTTCCTNTGCATTCACTTACTTTTGCAGTCAAAGACATGTTTGAGGTGAAAGGGCACGTAGTGGGCTTCGGGAGTCCTGAATGGGCAAAGACTCATCCGGCGGCTACATCTACTGCTCCNACAATTTTGGCTCTCCTACAAGCAGGTGCCACTTGTGTGGGTACCAACGTCACGGACGAATTGGCTTATAGCATAAGCGGAGAGAACATACATTATGGCACACCTAGAAATCCCTGTGCACCAGATCGAGTTCCTGGAGGATCTTCTAGTGGCTCTGCTGTCGCGGTTGGTGCAAAGCTTGTGGATTTCTCATTAGGAACTGATTGCATAGGAAGTGCAAGGGTGCCTGCATCATACTGTGGAATTTTCGGTATTCGTCCTTCTCATGGTACTATTTCAAGGTCAGGAGTTACTCCAATGGCACAAAGTTTGGATACCATAGGATGGTTTGCTAGGGATCCAACAATTTTGAGCAGAGTTGGACAAGTACTTCTCCATTTGCCGAACGTCACAAATGTTAGACCTACTCACATTATCATTGCAGATGACTGTTTTCAGCTTTCAACCATTCCATATGATGCAGTTACACGAAGTATCATCAAAGTTTCAGAGAAGTTATATGGAGGGGATGTATTAAGGCATGAAATCCTTGGCGATTATGTGAAGGCCAATGTTCCAAGTTTGAAGCATTTTATGAGTAAAGAGAATACAGACTCAGTTCCACCACTGGCTGCACTTTCAAATGCAATGCAATTGCTTGCGAGGTATGAATTCAAGAATAACCATGGCGAATGGATTAGTGAAGTCAAACCTAATCTAGGTCCTGGAGTTTCAGAAAATGTTGCAGAAGCCCTGAAGACAACAGGGGAGAATATTGATATTTGTCATGCTATAAAAGGAGAATGGCTTTATGCTCTCAATGCTCTTCTTGGGGATTTTGGTGTTATGATGATCCCTACAGTTCCAGGGCCTCCACCGAAATTACAAACAAGTCCACCAGAATTAAAAGATTTTAATGAAAGGGCTTTTATCCTACAATCAATTGCTGGATTATCCGGGTGTTGCCAGATAAGCATACCATTGGGGATGTATAACAACCTCCCGATATCAATTTCCCTGGTGGCTAAACATGGGGCAGATGGATTCTTACTGTCCCTTGTTGAGAGTATTTATGACAACATTAAAGAAGAGGAAGCAACATACCCCAGAACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	591502	594629	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000113.1	PF01425.16	Amidase	25	176	1.90E-47
Glyur000001s00000113.1	PF01425.16	Amidase	247	407	1.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.027
SRR1783600	control	0.009
SRR1783602	moderate drought stress	0.030
SRR1811619	moderate drought stress	0.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.264
DRR006520	Root Summer glycyrrhizin high producing strain	0.167
DRR006521	Root Winter glycyrrhizin high producing strain	0.093
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.150

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.053
SRR2868004	Drought Stress (root)	1.147
SRR2967015	Control (root)	0.312

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.172
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.705
SRR9715739	Root	0.000
SRR9715742	Root	0.155
SRR9715743	Root	0.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.118
SRR8749028	MeJA induced 9h	16.610
SRR8749029	MeJA induced 9h	26.018
SRR8749030	Uninduced	67.339
SRR8749031	Uninduced	123.039
SRR8749032	Uninduced	65.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.822
SRR8400027	Control - Root	0.182