Gene detail

Gene detail information of Glyur000001s00000107.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27470.1	0	seryl-tRNA synthetase / serine--tRNA ligase
NR	KHN16130.1	0	Serine--tRNA ligase [Glycine soja]
COG	YP_003424689.1	7.00E-143	seryl-tRNA synthetase SerS [Methanobrevibacter ruminantium M1]
Swissprot	tr\|O81983\|SYS_HELAN	0	Serine--tRNA ligase
trEMBL	tr\|I1LBD0\|I1LBD0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G29600.1}

Sequence

Transcript Sequence

>Glyur000001s00000107.1
CACTTTCATTTTTAGCTGCAATAAAATTCTCTCCTTTTCTCTCTATTTTTTTTGGCAGCGCCGAAAACATTAAAAAAAAAAAAACTTCCTTTTAATAAATTGCAAAACCCTCTTCCCATACGCACACTCCTTCGTTCCCTCTTCCATTTTTCAATCAGAGTGTGAGGGTGACGGCGGCGTGAGAAGCATGTTGGACATCAACCTATTCAGGGAGGAGAAGGGCCACAACCCCGAAATCATCCGCGAATCCCAACGTCGTCGTTTCGCCGGCGTCGAACTAGTCGACGAGGTTATCAATCTCGACAAAGAATGGCGAAAGCGTCAATTCGAGCTGGAGAATCTCCGCAAAGAGTTCAACAAAATCAATAAGGAAGTTTCCAAACTCAAGCGTGCTGGTGAAGATGCAACCAAGTTAATTGCTGAATCTGAAGAGACTAAGAAATCGATTGCGGAGAAAGAGGTCGAGGTTCGGGAAACTCTAAAGCTTCTGAACTGCAAATTGGAAACCATTGGAAACCTCGTGCACGATTCTGTTCCCATCAGCAATGATGAGGCCAACAATCTTGTGGTTAGATCATGGGGTGAGAAAAGAGTGGAGCCTAAACTGAAGAATCATGTGGATCTAGTTGAGCTTCTTGGGATAGCTGATACGAAGAAAGGATCTGATGTAGCTGGAGGTAGAGGTTTCTATCTCAAAGGAGATGGTGTTCGTCTTAATCAAGCTCTGATCAACTTTGGGCTTGATTTTTTGGAGAAAAGGGAATATACTTTGTTACATACTCCTTTCTTCATGAGAAAAGAGATAATGTCCAAGTGTGCTCAATTAGCCCAATTTGATGAAGAACTTTATAAGGTAACTGGTGAAGGAGAGGACAAATATCTGATTGCAACAGCAGAGCAGCCACTTTGTGCATATCATTTAGATGATTGGATCCACCCTTCCCAGCTACCCTTAAGATATGCTGGATATTCGTCTTGCTTTCGTAAGGAAGCTGGATCTCATGGTCGAGATACTCTAGGAATATTCCGAGTTCACCAATTTGAGAAAGTGGAGCAGTTTTGCATTACTTCCCCAAATGGAAATGATTCATGGGACATGCACGAGGAAATGCTGAAAAACTCCGAGGACTTTTACAAGANGTTAAACCTTCCATATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATGCTGCAGCAAAGAAGTATGATCTAGAAGCATGGTTTCCAGCTTCTCAAGCTTACAGGGAGTTGGTATCCTGTTCAAATTGTACAGACTATCAGGCCAGAAAATTAGAAATTCGATATGGACAGAAGAAGAGCAATGAGCAGATGAAGCAATATGTTCATTTGTTGAACTCTACTCTCACTGCCACTGAGAGGACCATTTGCTGCATACTAGAGAACTACCAGAAGGATGATGGGGTAGAGATACCAGAAGTCCTCAGGCCATTCATGGGTGGAAAGACTTTCCTGCCTTTCAAGAACCAACCAAATAACGAAGCCAAAGGGAAGAAATCAAAGGCCTAATTGAATTATTTTCAGTCTGAATGATATTTATGAAGAGTTAGTTCAGAATTGTAGGTTATGACCACTGTTATTCCTTCCACCATAACCTGTTGTCAACCCCCTCCCTCCCCTTCTCCTTGTATGCTTAAAGAGTAAATGATTTTGAGGAACATGCACGATTTTGTGCGAAAAGGACATACTTGGCATATTCTGTAACTCATCAATCTATAAACCTTGTGCTTTAGTCACTTTGTTGTGGTGATTTTATTTCATTGTGAAAGGTTAACACTCCGTTTTGCTTTAATGTTTGATTTTGATATATACACAAACACCTGTAACATAAAAATGTCAGAACGTGTAATTCAAGTGCAAGGGAATTCTGGTTAGTGGATTAAAATTCTGAAGTCTGCATTGGTTTCTGTCTTGCAGGGCGTCGAAACATGTTCAATTTAATCGAGCTGCTCATATACTAACTTCAATTACAAAATTCTTTGGAAAGAGGAATGCGTTCTGGAAAATTGGGCCTAGAATATTCAATGCATTGTAGTAGGGAGGGATTATTTGGTACCCAACCTTCTTGCTGGTTCTTGACAGGGTTACTTACGAGTTAGGATGACAAGTTTTACAACTATGATGATTGATTTTACGCTATGGATCGGCTTGCATGTTTCTGAATCGGTATTGTTCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	572794	576735	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01875	SARS, serS	EC:6.1.1.11	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006434 seryl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004828 serine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000107.1	PF02403.17	Seryl_tRNA_N	1	112	1.90E-29
Glyur000001s00000107.1	PF00587.20	tRNA-synt_2b	177	349	1.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.602
SRR1783600	control	40.701
SRR1783602	moderate drought stress	50.559
SRR1811619	moderate drought stress	50.637

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	74.604
DRR006520	Root Summer glycyrrhizin high producing strain	73.384
DRR006521	Root Winter glycyrrhizin high producing strain	57.813
DRR006522	Root Winter glycyrrhizin high producing strain	56.637
DRR006523	Root Summer glycyrrhizin low producing strain	75.528
DRR006524	Root Summer glycyrrhizin low producing strain	75.572
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.928
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.597

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.411
SRR2868004	Drought Stress (root)	62.945
SRR2967015	Control (root)	64.432

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.534
SRR9715740	Leaf	38.235
SRR9715741	Leaf	39.057
SRR9715739	Root	21.525
SRR9715742	Root	42.685
SRR9715743	Root	38.711

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.261
SRR8749028	MeJA induced 9h	50.321
SRR8749029	MeJA induced 9h	59.718
SRR8749030	Uninduced	22.872
SRR8749031	Uninduced	18.243
SRR8749032	Uninduced	20.484

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.423
SRR8400027	Control - Root	65.357