Gene detail information of Glyur000001s00000102 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27560.1 | 8.00E-119 | Domain of unknown function (DUF1995) |
| NR | XP_007144730.1 | 3.70E-179 | hypothetical protein PHAVU_007G180000g [Phaseolus vulgaris] |
| trEMBL | tr|V7BFS3|V7BFS3_PHAVU | 1.00E-179 | Uncharacterized protein {ECO:0000313|EMBL:ESW16724.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 544611 | 550070 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000102.1 | PF09353.5 | DUF1995 | 102 | 347 | 5.70E-44 |
| Glyur000001s00000102.2 | PF09353.5 | DUF1995 | 102 | 317 | 1.30E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.797 |
| SRR1783600 | control | 10.712 |
| SRR1783602 | moderate drought stress | 7.383 |
| SRR1811619 | moderate drought stress | 7.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.669 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.699 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.329 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.172 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.142 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.141 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 66.039 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 66.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.660 |
| SRR2868004 | Drought Stress (root) | 9.335 |
| SRR2967015 | Control (root) | 8.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.729 |
| SRR9715740 | Leaf | 64.584 |
| SRR9715741 | Leaf | 35.839 |
| SRR9715739 | Root | 5.473 |
| SRR9715742 | Root | 6.850 |
| SRR9715743 | Root | 5.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.292 |
| SRR8749028 | MeJA induced 9h | 1.532 |
| SRR8749029 | MeJA induced 9h | 1.708 |
| SRR8749030 | Uninduced | 1.283 |
| SRR8749031 | Uninduced | 0.636 |
| SRR8749032 | Uninduced | 0.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.039 |
| SRR8400027 | Control - Root | 15.740 |