Gene detail

Gene detail information of Glyur000001s00000096.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55020.1	lipoxygenase 1
NR	XP_003536076.1	PREDICTED: probable linoleate 9S-lipoxygenase 5-like [Glycine max]
Swissprot	tr\|Q43191\|LOX15_SOLTU	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|I1LBB9\|I1LBB9_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000001s00000096.1
CAAACACTTAACAGCGACGTTGCTTCACTGTTACTCTGCCGTAGTAGTAGTGCCAATTCTTCTCACTTAAAAAAATGCTTCAGAACATTGTGAACGCTCTCACCGGAGACAGAAGCGGAAACCGCCACCGAGTGAAAGGGACGGTGGTGTTGATGAAGAAGAATGTGCTGGACTTCAACGACTTCAGTGCCTCCTTTCTCGATCGTCTTCACGAGTTTGTGGGTAAACGAGTTTCTCTCCAGTTGATAAGTGCTGTTACCGTTGACCCTGGGAATGGGTTGAAGGGGAAACTTGGGAAGCCTACTTATCTAGAAGATTGGATCACCACAATCACACCTCTGACAGCGGGAGAATCAGCGTTCAGGGTTACATTTGATTGGGATGAGGATATAGGAACACCAGGAGCCTTTTCAGTAAGGAATAATCATCACAGTGAGTTCTACCTCAGAAGCCTGACACTTGAAGATGTTCCTGGTCAAGGTGTTATCCACTTTGTCTGCAACTCCTGGGTATACCCTGCACATAAATATGAAAAAGATCGCATTTTCTTCTCCAACAAGACATACCTTCCAAGTGAAACACCAGTGCCAATACTTAAGTACAGAGAAGAAGAACTGGAGACTTTAAGAGGAGATGGAAAGGGCCAGCTCCAAGAATGGGATAGGGTCTATGATTATGCATACTACAATGATTTGGGAGATCCGGATAAGGGTCCGCAACATGCTCGTCCTGTTCTAGGAGGGTCTAGCAAATACCCCTACCCTCGTAGGGGAAGAACTGGTAGACTACCTACAAAATCAGATCCTAATTCTGAGAGTAGGCTGAATCTTGTCATGAGCTTAGACATCTATGTTCCCAGGGATGAAAGATTTGGTCACTTGAAAATGGCAGATTTCCTTGCTTATGCACTGAAATCCATAGTTCAAGTTCTCAAACCTGAACTGGAATCTCTATTTGATAGCACCCCTAATGAGTTTGACAGCTTTGAAGACGTCATCAAACTCTATGAGGGTGGGATTGAAGTGCCTGAGGGTATACTCAGAGATGTTAGGGATAACATCCCTACAGAGATGCTTAAGGAAATTTTTCGAACTGATGGGGAAAGGTTCCTCAAATTTCCCTTGCCTCAAGTGATTGCAGCGGATAAATCTGCATGGAGAACAGATGAAGAATTTGCTAGGGAGATGTTGGCTGGTATAAACCCTGTCATGATTCGTAGTCTCCAAGAGTTCCCACCAACAAGCAAGCTAGATCATAAAGCCTATGGTGATCATACCAGTACAATAGCCAAAGAACACATCGAAAGGAATCTAGATGGGCTCACTGTAGATGAGGCAATTAGAGAAAGGAAGTTGTTCATATTAGATCACCATGATACACTAATGCCATACTTGAGGAGGATAAACTCCACTTCTACAAAGACATATGCCAGCAGGACAGTTCTGTTCTTGCAAAATAATGGGACTTTAAAGCCGCTAGCCATTGAGTTGAGTTTGCCACATCCTGAGGGAGATCAATATGGTGCCATCAGTAAAGTTTACATGCCTGCGGAACAAGGAGTTGAAAATTCCATTTGGCAACTAGCCAAAGCTTATGTTGGGGTAGTTGACTCAGGCTATCATCAACTTATCAGCCACTGGTTGCATACTCATGCTGTCATTGAGCCATTCATCATAGCTTCGAATAGGCAGCTTAGCGTGCTTCACCCTATTCATAGGCTATTACATCCTCACTTTCATGACACCATGAATATAAATGCACTTGCGCGACAGATCCTCATCAATGCAGGTGGTGCTCTAGAGTCAACAGTTTCTCCATCTAAGTATTCTATGGAGTTTTCATCTGTGCTTTACAAGGACTGGGTTTTCCCTGAGCAAGCATTGCCTGAAGATCTTGTCAAGAGAGGAATGGCTGTTAAGGACTCAACTTCCCCATACGGTCTTCGGTTGTTAATTGAGGATTACCCTTATGCAGTCGATGGGCTAGAGATTTGGTTTGCCATCAAGACATGGGTTCAGAACTACTGCTCCTTTTACTACAAGGAGGATGACTCGGTCAAGAAAGACTCAGAACTCGAATCTTGGTGGAAGGAAATAAGGGAGGAGGGTCATGGTGACAAGAAAGATGAGCCTTGGTGGCCAAAGATGCAAACACTTGAAGAGCTGATTGAAACTTGCACAACTATTATATGGATTGCTTCAGCTCTCCATGCTGCAATCAACTTTGGACAGTACCCATATGGAGGCTACCCACCGAGTCGCCCGTCTATGAGTCGAAGATTCATGCCGGAAAAGGGAACTCAAGAGTACGATGAGCTCGTGGCAAATCCTGATAAGGCTTTTCTGAAAACAATTACTGCACAATTCCAGGCTGTTCTGGGCATTTCACTTGTAGAAATCTTGTCTAGACATTCTACTGATGAGGTCTACCTTGGGCAAAGAGACACTCCACATTGGACATCTGATGCAGGTCCATTGGAGGCTTTTGAGAAGTTTGGCAAAAAACTTGCTGAAATAGAGGAAAGGATCTTGAGAATGAACAATGATGAGAAGCTCAGAAACAGGTTTGGTCCAGTTAAGATGCCATACACCTTGCTTTATCCAACAAGTGAAGGTGGACTAACTGGCATGGGGATTCCTAATAGCATCTCAATTTAAAGTGTCTGCATGTTCTTGACTTTAGTTATTTTTAATGATAGTAGCTTTAGGGAACTTGGTAATTTTGAATCCTAATTTTAGAGTGGGCAACAGTCTTTTGACTCTTTCGCTTCATTATAATATGGTGTGCAAACTTGCTGTNGAATACCTGTATTTGCTTTACCATACTTTAACCATTGTCATTTTACAAAATATCTTGTTTGGACAAACACTATAAATTGTGATTCGGCGAAGGTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	524163	530362	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000096.1	PF01477.18	PLAT	68	159	6.70E-21
Glyur000001s00000096.1	PF00305.14	Lipoxygenase	172	844	0

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.247
SRR1783600	control	10.302
SRR1783602	moderate drought stress	7.663
SRR1811619	moderate drought stress	7.489

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.327
DRR006520	Root Summer glycyrrhizin high producing strain	10.272
DRR006521	Root Winter glycyrrhizin high producing strain	2.962
DRR006522	Root Winter glycyrrhizin high producing strain	2.852
DRR006523	Root Summer glycyrrhizin low producing strain	13.747
DRR006524	Root Summer glycyrrhizin low producing strain	14.003
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.510

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.524
SRR2868004	Drought Stress (root)	14.007
SRR2967015	Control (root)	14.782

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.869
SRR9715740	Leaf	23.378
SRR9715741	Leaf	27.424
SRR9715739	Root	8.970
SRR9715742	Root	35.349
SRR9715743	Root	30.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.449
SRR8749028	MeJA induced 9h	13.503
SRR8749029	MeJA induced 9h	8.306
SRR8749030	Uninduced	3.348
SRR8749031	Uninduced	2.143
SRR8749032	Uninduced	2.698

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.371
SRR8400027	Control - Root	10.436