Gene detail information of Glyur000001s00000084.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03840.1 | 7.00E-87 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_007144938.1 | 0 | hypothetical protein PHAVU_007G196100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SCQ6|IDD2_ARATH | 1.00E-114 | Protein indeterminate-domain 2 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|V7BGH7|V7BGH7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW16932.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 438515 | 442796 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 134.944 |
| SRR1783600 | control | 135.612 |
| SRR1783602 | moderate drought stress | 218.085 |
| SRR1811619 | moderate drought stress | 217.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 102.866 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 101.861 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 85.713 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 83.355 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 100.180 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 99.877 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 72.740 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 72.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.769 |
| SRR2868004 | Drought Stress (root) | 45.132 |
| SRR2967015 | Control (root) | 54.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.694 |
| SRR9715740 | Leaf | 42.426 |
| SRR9715741 | Leaf | 46.704 |
| SRR9715739 | Root | 28.939 |
| SRR9715742 | Root | 57.426 |
| SRR9715743 | Root | 45.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.318 |
| SRR8749028 | MeJA induced 9h | 41.626 |
| SRR8749029 | MeJA induced 9h | 33.857 |
| SRR8749030 | Uninduced | 19.410 |
| SRR8749031 | Uninduced | 15.489 |
| SRR8749032 | Uninduced | 19.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 90.335 |
| SRR8400027 | Control - Root | 94.879 |