Gene detail information of Glyur000001s00000083 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05410.2 | 2.00E-98 | Photosystem II reaction center PsbP family protein |
| NR | XP_003536074.1 | 8.43E-159 | PREDICTED: psbP domain-containing protein 7, chloroplastic [Glycine max] |
| Swissprot | tr|F4J7A7|PPD7_ARATH | 2.00E-128 | PsbP domain-containing protein 7, chloroplastic (Precursor) |
| trEMBL | tr|G7I8M8|G7I8M8_MEDTR | 9.00E-159 | Photosystem II reaction center PsbP family protein {ECO:0000313|EMBL:AES61378.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 435867 | 437242 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000083.1 | PF01789.11 | PsbP | 163 | 277 | 4.60E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.947 |
| SRR1783600 | control | 1.067 |
| SRR1783602 | moderate drought stress | 2.559 |
| SRR1811619 | moderate drought stress | 2.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.386 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.385 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.568 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.603 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.644 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.755 |
| SRR2868004 | Drought Stress (root) | 7.822 |
| SRR2967015 | Control (root) | 4.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.599 |
| SRR9715740 | Leaf | 42.894 |
| SRR9715741 | Leaf | 50.208 |
| SRR9715739 | Root | 4.088 |
| SRR9715742 | Root | 4.517 |
| SRR9715743 | Root | 1.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.723 |
| SRR8749028 | MeJA induced 9h | 3.602 |
| SRR8749029 | MeJA induced 9h | 2.155 |
| SRR8749030 | Uninduced | 2.310 |
| SRR8749031 | Uninduced | 1.022 |
| SRR8749032 | Uninduced | 2.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.005 |
| SRR8400027 | Control - Root | 4.362 |