Gene detail information of Glyur000001s00000079 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05420.2 | 0 | acyl-CoA binding protein 4 |
| NR | KHN20236.1 | 0 | Acyl-CoA-binding domain-containing protein 4 [Glycine soja] |
| COG | YP_008154472.1 | 4.00E-12 | hypothetical protein SCE1572_40550 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q9MA55|ACBP4_ARATH | 0 | Acyl-CoA-binding domain-containing protein 4 |
| trEMBL | tr|I1NJ06|I1NJ06_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G37940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 407114 | 416518 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000079.1 | PF00887.14 | ACBP | 29 | 99 | 4.30E-18 |
| Glyur000001s00000079.1 | PF13964.1 | Kelch_6 | 186 | 227 | 1.80E-08 |
| Glyur000001s00000079.1 | PF13415.1 | Kelch_3 | 306 | 355 | 9.40E-12 |
| Glyur000001s00000079.1 | PF13415.1 | Kelch_3 | 360 | 405 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.385 |
| SRR1783600 | control | 9.315 |
| SRR1783602 | moderate drought stress | 6.404 |
| SRR1811619 | moderate drought stress | 6.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.101 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.925 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.328 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.279 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.860 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.360 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.944 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.029 |
| SRR2868004 | Drought Stress (root) | 30.320 |
| SRR2967015 | Control (root) | 29.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.182 |
| SRR9715740 | Leaf | 6.372 |
| SRR9715741 | Leaf | 8.751 |
| SRR9715739 | Root | 2.821 |
| SRR9715742 | Root | 7.850 |
| SRR9715743 | Root | 6.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.737 |
| SRR8749028 | MeJA induced 9h | 17.044 |
| SRR8749029 | MeJA induced 9h | 11.254 |
| SRR8749030 | Uninduced | 5.191 |
| SRR8749031 | Uninduced | 3.370 |
| SRR8749032 | Uninduced | 3.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.489 |
| SRR8400027 | Control - Root | 23.565 |