Gene detail

Gene detail information of Glyur000001s00000074

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27680.1	0	RECQ helicase SIM
NR	AES61390.2	0	RecQ family ATP-dependent DNA helicase [Medicago truncatula]
COG	YP_722849.1	1.00E-50	ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9FT69\|RQSIM_ARATH	0	ATP-dependent DNA helicase Q-like SIM
trEMBL	tr\|G7I8P0\|G7I8P0_MEDTR	0	RecQ family ATP-dependent DNA helicase {ECO:0000313\|EMBL:AES61390.2}

Sequence

Transcript Sequence

>Glyur000001s00000074.1
ATACCTTCATGAAACGGCGTCGTTTAGAGGTGCAAGGAATTGCAATGGATGCCAACAATGAATCTTCCGACCAAGTGATTGCAGAAATGGTTGAGATGGGTTTCGAGTATTCCCAAATTGTGGAAGCCATAAAAGTAGTGGGTCCATCCATTCCCAGCGCCGTGGAGCATATCTTCAATACTAGTACTAGCACTAGCACTACTAGCCCTGACCGTGAACCACCCACTACTACCCACATCTCCAAATTACGTGCACGCAATTCGAAGCCTCTCAAAAAACGAACTTCGTCCTCGTCCTCGTCCCTTCAAGCTCCAAAGTGTAGAATGCTCGACCATTATTTCCAACCCACTAATAAAGTCACAGAGAAAAACAACAATGTTGTTGTTGATGATGATGATGATGATGTGAAAGAGCACAAGGAGGTTTTACCTCAAATTGGAGTTGATGATGATCCCAGTGTAGCTCAAGATTTGTGTGTTGCGTTTGCACCTGATTGGGAGCAGAGAGCTAGCTTTCTATTGCAAAAGCATTTCGGTTTTTCATCCTTGAAAAGTTTTCAGAAGGAAGCACTCTCTGCATGGGTTGCTCATAGAGACTGTCTTGTCCTTGCTGCAACGGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTAGTGATTTCTCCCTTAATAAGCCTGATGCAAGATCAATGCTTGAAGCTAACAAAACATGGGATCAGTGCTTGCTTTCTTGGCTCTGGGCAACCTGATGGTGCTGTTGAAAAGAAAGCAATGAGAGGCATGTATAGTATAGTATATGTTTGCCCAGAGACAGTCCTAAGATTGATTCAACAACTGCAGAAGCTTGCAGAAAGCCGTGGTATTGCTTTGTTCGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGTCATGATTTTCGTCCGGCTTATAGCCGACTGTCTGTGTTGAGGGAAAATTTCTCTACTGGCAAGCTAAAATCCCTGAGATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAAGAGAGTTCGAGAAGACATTTTAAAATCACTATGCATGCCAAAAGAAACAACTGTTGTTCTCACATCATTTTTTCGATCTAATTTACGCTTCATGGTCAAGCATAGTAGAACATCACGGGCTTCTTATGAGAAAGATTTTAATGAATTGATTAAAGTGTATGGTGGAAAGCGAAATATCGGTGGAAGTAAAAAAGCTTTCATCTCAGATGATTTAGATGATGTTTCCTATAGCTCTGGTGCTAGTAGAATCTCCGATACAGACAATGTTTCTTCTTGTGATGAGGATGACAGCCAAGATGACTATGATNATAGAGATATTAATGTAATGCACTCAGGAAATGCAGACAATTTTGAAAAGGGGGGAAAATTGTCAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGTGGTCTGTGGTGAATTTTGCGCACAACCTCCTCCCAAGGAATGCGAGTTATCTGAGACAATTGATCCGCCTACAAAACCAGTAAAAAGACTCAAAATTCTTAAGGAGCCTTTGGAAGAAGGACCAACAATCATATATGTACCCACCAGAAAAGAAACCCTGAGAATTGCCAAGTATCTATGCAAGTTTGGTGTGAAGGCTGCTGCTTATAATGCAGGGCTGCCCAAGTTGCATCTAAGAAGGATTCATAAAGAATTTCATGAAAATACTTTAAAGAGTTTGGAAGCCTACTATCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTATATGCAAACNTAGCAAGAATGCCATCACTTTTGCCAAGCCGTAGAAGTGAAGATATGATAAAACAGGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCACGTTGTCGAGCAAAGACACTTGTGGAGTACTTTGGAGAGGATTTCAGTAATCAGAAATGTCTCTTATGTGATGTTTGCATTAATGGACCACCTGAAAAAAAGAATCTAAAAGAGGAGGCTTGTATTTTACTGCAAACTATAGGTGCCCATAATGCATGTAGCTATTCCAAGGATTCCTCATTCAATGATGATATCCATTTCGATTCCAATGCTAGAAGACTAAGAGAGAGGCCAAGTCTTATGANGTTAGTTAGAAATATAAGGGAGCAGGTTCAAAAATTTTTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGGATTTTGGAAGTTAAAGAATATATTAGGGAAGGAGATGACAAGACCCATGTTCAGATAAAATACCCAGAGCCAACAGAACTGGGATTGGAATTTGTGAAGTCCATGAGTGAGCAAACTTTCTATGTTTACCCNGAGGCAGATATGTTGCTTGCAAGGAAAACTGACAAACCATATTCCTCGTTCTCAGAATGGGGTAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTGGAAAGAATACAACTCAATAGAAATCCAATGATGCTGCAGAGTACCAAAAAGCAACCAAAGAGGAAAACTAAAAAAGTGCAACCTGATCTGAGGANTTCTCGTGGTAGACTGGCAGCAAAACTCTCAAGATATAAGTGATATGTCAAGGTTATCTAATCTAGTTTTTAAAATGTACGGTTTACTCATTGCCACCCAGATTGAATTCATTATTCATCCATGATCATATCAATGTTTGCCAAGATTAATTGTAAAGTCATGATTAAAAGTCATTTTGGATTTTATTAATGTATGTCCGCCATGAAGGCCGCGTGGTGGGGAACTGAGAATTTATTGTACTGATTCAAATCTATGTCCATAGCCACTGAATTGANATTCCAATAATGCAATCCTAATAGATAGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	387526	393461	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006310 DNA recombination

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008026 ATP-dependent helicase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000074.1	PF00270.24	DEAD	183	350	4.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.803
SRR1783600	control	3.727
SRR1783602	moderate drought stress	3.401
SRR1811619	moderate drought stress	3.386

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.365
DRR006520	Root Summer glycyrrhizin high producing strain	2.367
DRR006521	Root Winter glycyrrhizin high producing strain	6.494
DRR006522	Root Winter glycyrrhizin high producing strain	6.229
DRR006523	Root Summer glycyrrhizin low producing strain	2.034
DRR006524	Root Summer glycyrrhizin low producing strain	2.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.209
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.248
SRR2868004	Drought Stress (root)	6.187
SRR2967015	Control (root)	5.202

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.777
SRR9715740	Leaf	1.011
SRR9715741	Leaf	0.865
SRR9715739	Root	0.097
SRR9715742	Root	0.730
SRR9715743	Root	0.819

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.779
SRR8749028	MeJA induced 9h	8.922
SRR8749029	MeJA induced 9h	5.580
SRR8749030	Uninduced	2.728
SRR8749031	Uninduced	2.055
SRR8749032	Uninduced	1.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.700
SRR8400027	Control - Root	5.995