Gene detail

Gene detail information of Glyur000001s00000062

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05540.1	2.00E-71	Methionine sulfoxide reductase (MSS4-like) family protein
NR	AEQ20639.1	2.75E-112	translationally controlled tumor protein [Hevea brasiliensis]
Swissprot	tr\|Q5J907\|TCTP_ELAGV	8.00E-112	Translationally-controlled tumor protein homolog
trEMBL	tr\|R4HIT3\|R4HIT3_HEVBR	1.00E-112	Translationally controlled tumor protein {ECO:0000313\|EMBL:AEQ20639.1}

Sequence

Transcript Sequence

>Glyur000001s00000062.1
GATTTATATTGCATCAACTCTCATTCAATCACATACAGATCCCACTTTCATCACGAAACTAGAAATTTCGAAGATTTCTAAATAATAATATAAGTGTTTCGATATAAAACTAACTCATCCAACAATAAAAGGTAACAAACAACAAAAGTAGTAAAAGTAAAATTAGTATCAGATTAGGACTAAAGGAGAAAAACAAGAACCTGTTTGTGCAATCTAAATATCAGGAATCCCACTGTAGCTTGAACACTTGATTCTATAAAAGCTCACCACCTCTGTTCCCAAAGCTCCCTCACCCTCACAAACTCTTTGCGCCCTTAGCTCTCTCTTCTTCCTTATAATTTTCCAATTAGATTAGATTCCTTTGTTCACAGCCAAAGAAGAAGAACAACAGCAACTGTAACCATGCTTGTCTATCAGGATATTCTTACAGGTGATGAGCTTCTCTCTGACTCATTCCCGTACAAGGAAATTGAGAATGGAATGCTGTGGGAAGTGGAAGGAAAGTGGGTTGTTCAAGGAGCAGTCAACGTAGATATTGGTGCTAACCCTTCTGCAGAGGGTGGAGATGAGGACGAGGGTGTTGATGACCAAGCTGTCAAAGTAGTTGATATTGTTGACACTTTCAGGCTTCAGGAGCAACCTTCTTTTGATAAGAAGCAATTTGTTACTTATATGAAGAGATATATTAAGTTGTTGACACCAAAATTAGAGCCAGAGAAGCAAGAGCTGTTTAAGAAGAACATTGAAGGAGCAACTAAGCACCTCCTCTCAAAGCTCAGTGACCTCCAATTTTTTGTGGGGGAGAGTATGCACGATGATGGCAGCCTTGTCTTTGCGTACTACAAGGAAGGTGCCACTGATCCAACTTTTATCTACTTTGCATACGGGTTGAAGGAAATCAATTGTTACATATCTGGAAGAAAACAAACCTCAGTTGCATCACGGCGGAGAGCCAACATGCCAGCCTCAACACAGACAGCCTTCAGTTGCGCTCCATTGAAATCATCTGTGGACCGAGCTAGTTCTTCAAAGTTGACATCTGGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	338753	342277	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000062.1	PF00838.12	TCTP	1	165	1.40E-67
Glyur000001s00000062.2	PF00838.12	TCTP	1	165	6.00E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.348
SRR1783600	control	14.770
SRR1783602	moderate drought stress	18.985
SRR1811619	moderate drought stress	18.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.395
DRR006520	Root Summer glycyrrhizin high producing strain	42.466
DRR006521	Root Winter glycyrrhizin high producing strain	25.022
DRR006522	Root Winter glycyrrhizin high producing strain	24.625
DRR006523	Root Summer glycyrrhizin low producing strain	55.576
DRR006524	Root Summer glycyrrhizin low producing strain	56.562
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.746
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.934

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.829
SRR2868004	Drought Stress (root)	21.676
SRR2967015	Control (root)	38.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.641
SRR9715740	Leaf	15.837
SRR9715741	Leaf	17.493
SRR9715739	Root	21.455
SRR9715742	Root	29.394
SRR9715743	Root	25.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.909
SRR8749028	MeJA induced 9h	0.778
SRR8749029	MeJA induced 9h	0.392
SRR8749030	Uninduced	4.299
SRR8749031	Uninduced	2.346
SRR8749032	Uninduced	3.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.139
SRR8400027	Control - Root	53.868