Gene detail information of Glyur000001s00000057 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05550.1 | 6.00E-24 | Hypoxia-responsive family protein |
| NR | XP_003591157.1 | 4.63E-47 | hypothetical protein MTR_1g083420 [Medicago truncatula] |
| trEMBL | tr|G7I8Q8|G7I8Q8_MEDTR | 2.00E-47 | Uncharacterized protein {ECO:0000313|EMBL:AFK34547.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 310024 | 312866 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000057.1 | PF04588.8 | HIG_1_N | 19 | 69 | 1.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.319 |
| SRR1783600 | control | 22.977 |
| SRR1783602 | moderate drought stress | 13.637 |
| SRR1811619 | moderate drought stress | 13.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.611 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.757 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 92.586 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 89.608 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.031 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.646 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 72.506 |
| SRR2868004 | Drought Stress (root) | 65.599 |
| SRR2967015 | Control (root) | 43.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.907 |
| SRR9715740 | Leaf | 26.810 |
| SRR9715741 | Leaf | 48.224 |
| SRR9715739 | Root | 23.704 |
| SRR9715742 | Root | 44.749 |
| SRR9715743 | Root | 37.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 573.476 |
| SRR8749028 | MeJA induced 9h | 445.927 |
| SRR8749029 | MeJA induced 9h | 987.970 |
| SRR8749030 | Uninduced | 830.406 |
| SRR8749031 | Uninduced | 737.427 |
| SRR8749032 | Uninduced | 1678.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.483 |
| SRR8400027 | Control - Root | 57.092 |