Gene detail information of Glyur000001s00000050


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05590.12.00E-85ribosomal protein L18
NRXP_007144959.11.11E-125hypothetical protein PHAVU_007G197900g [Phaseolus vulgaris]
COGNP_126222.13.00E-0850S ribosomal protein L18e [Pyrococcus abyssi GE5]
Swissprottr|O65729|RL18_CICAR5.00E-11760S ribosomal protein L18 (Fragment)
trEMBLtr|V7BIX1|V7BIX1_PHAVU4.00E-126Uncharacterized protein {ECO:0000313|EMBL:ESW16953.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00001277993280354-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000001s00000050.1PF00828.14Ribosomal_L18e21221.50E-25
Glyur000001s00000050.2PF00828.14Ribosomal_L18e21221.50E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control255.405
SRR1783600control256.729
SRR1783602moderate drought stress197.437
SRR1811619moderate drought stress196.162

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain387.572
DRR006520Root Summer glycyrrhizin high producing strain383.658
DRR006521Root Winter glycyrrhizin high producing strain174.818
DRR006522Root Winter glycyrrhizin high producing strain170.204
DRR006523Root Summer glycyrrhizin low producing strain402.410
DRR006524Root Summer glycyrrhizin low producing strain404.835
DRR006525Leaf Summer glycyrrhizin high producing strain106.409
DRR006526Leaf Summer glycyrrhizin high producing strain105.421

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)545.977
SRR2868004Drought Stress (root)299.526
SRR2967015Control (root)296.439

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf197.916
SRR9715740Leaf166.099
SRR9715741Leaf174.738
SRR9715739Root177.792
SRR9715742Root201.752
SRR9715743Root217.619

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h724.082
SRR8749028MeJA induced 9h203.759
SRR8749029MeJA induced 9h490.890
SRR8749030Uninduced76.220
SRR8749031Uninduced51.734
SRR8749032Uninduced113.023

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root311.236
SRR8400027Control - Root264.915

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved