Gene detail information of Glyur000001s00000041 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56230.1 | 0 | Protein of unknown function (DUF1399) |
| NR | XP_003591171.1 | 0 | hypothetical protein MTR_1g083540 [Medicago truncatula] |
| trEMBL | tr|G7I8S2|G7I8S2_MEDTR | 0 | DUF1399 family protein {ECO:0000313|EMBL:AES61422.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 251364 | 255169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000041.1 | PF07173.7 | DUF1399 | 27 | 111 | 2.40E-05 |
| Glyur000001s00000041.1 | PF07173.7 | DUF1399 | 109 | 253 | 3.30E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.038 |
| SRR1783600 | control | 1.014 |
| SRR1783602 | moderate drought stress | 0.719 |
| SRR1811619 | moderate drought stress | 0.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.723 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.725 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.928 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.447 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.305 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.348 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.198 |
| SRR2868004 | Drought Stress (root) | 14.780 |
| SRR2967015 | Control (root) | 14.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.134 |
| SRR9715740 | Leaf | 2.080 |
| SRR9715741 | Leaf | 2.117 |
| SRR9715739 | Root | 0.782 |
| SRR9715742 | Root | 3.385 |
| SRR9715743 | Root | 3.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.087 |
| SRR8749028 | MeJA induced 9h | 3.493 |
| SRR8749029 | MeJA induced 9h | 3.427 |
| SRR8749030 | Uninduced | 3.868 |
| SRR8749031 | Uninduced | 1.069 |
| SRR8749032 | Uninduced | 0.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.250 |
| SRR8400027 | Control - Root | 5.311 |