Gene detail information of Glyur000001s00000039 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09155.1 | 2.00E-62 | phloem protein 2-B15 |
| NR | ACJ84585.1 | 6.34E-141 | unknown [Medicago truncatula] |
| Swissprot | tr|O80494|P2B15_ARATH | 2.00E-82 | F-box protein PP2-B15 |
| trEMBL | tr|B7FIK6|B7FIK6_MEDTR | 2.00E-141 | Uncharacterized protein {ECO:0000313|EMBL:AFK44830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 245331 | 247233 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000039.1 | PF00646.28 | F-box | 9 | 51 | 4.70E-09 |
| Glyur000001s00000039.1 | PF14299.1 | PP2 | 102 | 287 | 7.70E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.010 |
| SRR1783600 | control | 4.785 |
| SRR1783602 | moderate drought stress | 5.203 |
| SRR1811619 | moderate drought stress | 5.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 115.563 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 111.410 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.426 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.711 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.643 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.096 |
| SRR2868004 | Drought Stress (root) | 34.914 |
| SRR2967015 | Control (root) | 47.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.361 |
| SRR9715740 | Leaf | 1.745 |
| SRR9715741 | Leaf | 3.924 |
| SRR9715739 | Root | 6.665 |
| SRR9715742 | Root | 8.370 |
| SRR9715743 | Root | 8.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.933 |
| SRR8749028 | MeJA induced 9h | 41.176 |
| SRR8749029 | MeJA induced 9h | 85.183 |
| SRR8749030 | Uninduced | 132.804 |
| SRR8749031 | Uninduced | 255.167 |
| SRR8749032 | Uninduced | 240.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.869 |
| SRR8400027 | Control - Root | 14.418 |