Gene detail

Gene detail information of Glyur000001s00000035

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05625.1	1.00E-93	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_007144969.1	5.96E-152	hypothetical protein PHAVU_007G198500g [Phaseolus vulgaris]
COG	YP_007067503.1	3.00E-40	hypothetical protein Cal7507_4293 [Calothrix sp. PCC 7507]
trEMBL	tr\|V7BIX8\|V7BIX8_PHAVU	2.00E-152	Uncharacterized protein {ECO:0000313\|EMBL:ESW16963.1}

Sequence

Transcript Sequence

>Glyur000001s00000035.1
GTATTTTTGTAAAAAAAAAATTATCCCTTTTCATTCAGTTGCAAAAGAATAAGTACCCAAAACGCTAAACCCGCGCCATTATCAGTTATCAGTTATCACTCCACTAATAATCTTAAAAAAATCGATGCCTTCCCTTCCGTCCATGTCCATGTCCATGTCCATGTCCAAGTCCAAGTCCATTATCCACAACCTTAAACCCGCGATGTTGGTCTCCCCTTCCCCTTCTCTGCACCACACTTGCTCATTCCCACTGCCATTATCTTTCAAAGCACCCATCTTTTGCTCCAACCCTTCATCATCCCTCACCCGAAGACTCTTCCTTCCTTCTGTTTCCGGCATCTGGGACGCCTTAACCGGCGGCAATAACAATGCACGTGAAGCCCTTCTCGCAATTCGACGTGGAATGTCTCTCTTCAGGCAGGGTGATGTCTCGGCGTCTCTTGCGGAGTTCGACAGGGCAATTCAGCTGGACCCTCGTCAAAAGGCGTATCTTTGGCAAAGGGGCCTCTCACTTTACTACCTCAATAGATTTGAAGAAGGAGCTGAGCAGTTTCGGTTAGATGTTGCTCAAAATCCAAATGATACAGAAGAGTCCATATGGTGCTTTCTGTGTGAAGCTCAACTATATGGAGTTGGCATAGACCCAAGGCCAGTCATGCGGGAAGCATATAACATGTTTAAAGATGGTGGGGATCCTGAAAAGCTTGTAGCTGGATTCTCCAATAGCAGAGAAAGCGATTATTTTTATGCCTCACTATATGCTGGGCTTTATTACGAATCTCAGAATGAAACTGATGCTGCTAAAGTTCATATAGTTGCTGCATGCCAGTCTTCTTATGGGCAAAGGTCTGATGATTATATGGCTTCTCTTTCCAAGGTTCACTGTCTTTGTCGAAATTGGATCTTCAGCTAAAACATTCTGCAGCCTGTCCATTTAGCAAGATGAAGCAGATTCTTAAGTTTGTTCTATACACTATACTCACTGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	238580	241424	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000035.1	PF13414.1	TPR_11	85	145	1.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.147
SRR1783600	control	1.976
SRR1783602	moderate drought stress	1.442
SRR1811619	moderate drought stress	1.163

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.033
DRR006520	Root Summer glycyrrhizin high producing strain	1.156
DRR006521	Root Winter glycyrrhizin high producing strain	0.676
DRR006522	Root Winter glycyrrhizin high producing strain	0.640
DRR006523	Root Summer glycyrrhizin low producing strain	1.091
DRR006524	Root Summer glycyrrhizin low producing strain	0.783
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.633
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.114

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.138
SRR2868004	Drought Stress (root)	1.989
SRR2967015	Control (root)	4.136

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.164
SRR9715740	Leaf	15.966
SRR9715741	Leaf	5.100
SRR9715739	Root	0.293
SRR9715742	Root	1.313
SRR9715743	Root	0.900

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.655
SRR8749028	MeJA induced 9h	0.874
SRR8749029	MeJA induced 9h	0.662
SRR8749030	Uninduced	1.106
SRR8749031	Uninduced	0.394
SRR8749032	Uninduced	0.236

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.540
SRR8400027	Control - Root	6.560