Gene detail

Gene detail information of Glyur000001s00000032

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27930.2	2.00E-131	Protein phosphatase 2C family protein
NR	XP_006588446.1	0	PREDICTED: uncharacterized protein LOC100794039 isoform X1 [Glycine max]
Swissprot	tr\|Q9M9W9\|P2C34_ARATH	2.00E-170	Probable protein phosphatase 2C 34
trEMBL	tr\|I1LB78\|I1LB78_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G29100.1}

Sequence

Transcript Sequence

>Glyur000001s00000032.1
TTTATTTTCTCCCTTTTTATAACTGTTATTATCCAGAACCTGGTTTTCATAGAGTTCCATATTGGGTAAAACAGAAAGGCGACACAGCACATTGAGCCAACCAAGTAGTGGAGAATGGAAAAAGATTGTTATCCGTTACAATTTCAAGATATTTTTTAGTGACATACATAGGAACCCTCCTCACAGATACTCCAAATTTACATGCACTGATTGGGTAGTAGGTACTGTTTGCATCTAAATGTATACACTGAAAAAACTGTCTTTGCTTCTGTCTCCGTAGATAAAAGGGAACTGAACAGAAGAAGAGACCAGAAACAACCAAACAACAATGAATGAGAATGATGGATAGCCATATTCCTTCTACACATTTGCTTTCTCGAAGTTTCAGCAAGCAACCACAACTTCTCCTCCTGCTACTTCCTCAGGTTCTGGCTCTTTAGTTTTGGTTAATTCCTTCTTCATCTCCACACCGACAAGTCCAAGCTCCAAGATTCTGTACTATTCATAAAGAGTTGTAGTGGCACAAGCAGCATCCAGTGGTGGGAATCATATATATTGCAGGGTTGAATGGGGCATTTTTCGTCTGTGTTCAAGTCGTTGGCAATAAATAAAGGGAGGAGTTCTGGTAAATGTAGCGGGAGAGAAGCTGCGGAGGCAATGGCAAAGGAAGCAAAAAGAAATCACTTCATGCTGAATAGCTCGGGCACCGTTAATGTCGATGGTTCAAACAACTTTGCCTCAGTTTTCTCCAAAAGAGGCAAGAAAGGAGTGAATCAAGATTGTTGCATAGTGTGGGAAGAATTTGGGTGCCAAGAGGACATGATGTTCTGTGGGATTTTTGATGGGCATGGGCCTTGGGGTCACTATGTGTCCAGAAGAGTAAGAGAGTCAATGGCACCATCTTTGCTATGCAACTGGCAGGAAACACTTTCACAATTAACTCCAGAAATTGATGTAGAGACAGAGAAAAAGCAACACTGGTTTAATGTATGGAAGCATTCTTACTTGAAGACTTGTGCTGCCATTGATCAAGAACTAGAGCAGAATCGCAAGATTGATTCATTCTTCAGCGGAACAACTGCACTCTCAATTGTTAGACAGGGTGAACTCATTGTGATTGCAAATGTTGGTGACTCTCGTGCTGTATTAGCTACAACATCAGATGATGGAAATTTGGTTCCGGTTCAGCTGACAGTAGATTTCAAGCCCAATTTACCTCACGACGAGCCCGGGGTGCACCGGGTGTGGTTGCCGGATGAGGAGTGTCCGGGACTGGCCATGTCAAGGGCTTTTGGTGACTATTGTATAAAAGAGTATGGTCTTATTTCAGTGCCTGAGGTAACACAAAGGAATATAACCAGCAGGGACCAGTTTGTTGTGCTTGCCACTGATGGGGTGTGGGATGTAATCTCCAATCAAGAAGCGGTGGATATTGTGTCCTCAACACCGGACAGAACAGATTCAGCTAAACGCTTGGTGAAGTGTGCAATGCATGCATGGAAATGCAAGAGGCGTGGGATTGCCATGGATGACATTTCAGCTATCTGTCTCTTCTTTCACTCTTCATCACCTAATTCACCCCAAAATATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	218227	221340	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000032.1	PF00481.16	PP2C	73	305	3.60E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.084
SRR1783600	control	3.231
SRR1783602	moderate drought stress	4.336
SRR1811619	moderate drought stress	4.346

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.128
DRR006520	Root Summer glycyrrhizin high producing strain	16.556
DRR006521	Root Winter glycyrrhizin high producing strain	72.299
DRR006522	Root Winter glycyrrhizin high producing strain	69.534
DRR006523	Root Summer glycyrrhizin low producing strain	11.814
DRR006524	Root Summer glycyrrhizin low producing strain	11.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.037

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.288
SRR2868004	Drought Stress (root)	2.335
SRR2967015	Control (root)	3.541

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.955
SRR9715740	Leaf	8.825
SRR9715741	Leaf	7.325
SRR9715739	Root	2.193
SRR9715742	Root	11.459
SRR9715743	Root	8.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.129
SRR8749028	MeJA induced 9h	0.042
SRR8749029	MeJA induced 9h	0.072
SRR8749030	Uninduced	0.026
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.690
SRR8400027	Control - Root	7.037