Gene detail

Gene detail information of Glyur000001s00000028

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37790.1	6.00E-72	Homeobox-leucine zipper protein family
NR	XP_004509044.1	4.03E-129	PREDICTED: homeobox-leucine zipper protein HAT22-like [Cicer arietinum]
Swissprot	tr\|P46604\|HAT22_ARATH	4.00E-89	Homeobox-leucine zipper protein HAT22
trEMBL	tr\|V7CEJ4\|V7CEJ4_PHAVU	4.00E-128	Uncharacterized protein {ECO:0000313\|EMBL:ESW27783.1}

Sequence

Transcript Sequence

>Glyur000001s00000028.1
CACCCACCCAAGTGCCCCCACAAAAAGTCTCATTCATTCCCTTTCCCTTAATTAACTCGCTCTCTTTCTTAACTTAACACCTTTTGTGCTCCCACCAGACTATTTATAAACCACACCATCATCTAATCATCCCCACTCTTCCCTCACACCACCTCCCTAACTAGTTTCTCTTCTCTTTTCCTTTCACAAACAAAAACACCACCCCTTATTATTATTATTATTATTATTATTCTCTTGATGGGTATTGATCAGGATGCTAGTAATAACTCAGGCCTTCAGCTTATTCTAGGATTAGCTCTGAGTCTCACCCCTGAAGATAATACCATCGCTACTCCATCACCATCCAACAAGGTAATTGATGATCAATATCATAGGCCAAGGAAGCCACAGTATTCATCCAATTTCATCACTGCATGTGCAACAAGTAATAACTATGACGAGGCTGAGGCAGAGCCATCGTTGACGTTGGGTCTGTTATCCGGTGAGCAGAGTAATTACCAGCCGCAGCAGGTGGTCAAGGTCGTCCCCAAAAATAAAGGTTACTGTGAGGACCCTCTTCTTGACTTGTACTCCACACAGACTTCACCTCACAGCGGTGTTTCCTCCTTCTCCAGTGGCAGGGTGAAGAGGGAGAGGGATATTCTCAGCAGCGAAGAAGTGGAGGCAGAGAGGGTTAATTCTTCAAGAGCCAGCGACGAAGACGAAGACGGCACCACCGCCGCCAGGAAGAAGCTCAGGCTTACCAAAGATCAATCTGCTATGCTAGAGGAGAGCTTCAAACTACACAGCACTCTCAACCCTAAACAGAAGCAAGCTTTGGCCAGGCAGTTAAATCTACGGCCTCGACAAGTTGAGGTGTGGTTCCAGAACCGCAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTAAAGAAATGCTGTGAAACGTTGACGGACGAGAACAGGCGGTTACAGAAGGAGGTGCAAGAGCTGAAGGCACTGAAACTGGCACAGCCCCTGTACATGCCTATGCCTGCTGCAACCCTCACCATGTGCCCCTCCTGTGAGAGGCTCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTAGTGGTGGCGCTTCCAATATTAAGACCCCGTTCTCCATGGCTCCTAAGCCTCACTTCTACAACCCCTTCGCCAATCCTTCTGCAGCATGTTGATTGTTATTAGTACTAGTCAGGCCTTTTAGTTTTCAGGGCTACGAAGAAAAAAAAAACAGAAAAAGAAGACAACAAAGAGTTTCCCGGCCCCCACAACCATTGTATTTTTTTGGTTGAGGGATAATCGCTCTGCGAACTACAGCTACTGAAAGGGTTAAAACTTAAGGTTGTAATTAGTTAATACTGTAGAAATTAGTAACTGCGCGCAGCTGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	178502	180385	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000028.1	PF00046.24	Homeobox	163	217	4.90E-16
Glyur000001s00000028.1	PF02183.13	HALZ	219	262	9.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.136
SRR1783600	control	26.923
SRR1783602	moderate drought stress	23.859
SRR1811619	moderate drought stress	23.719

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.748
DRR006520	Root Summer glycyrrhizin high producing strain	41.335
DRR006521	Root Winter glycyrrhizin high producing strain	1.503
DRR006522	Root Winter glycyrrhizin high producing strain	1.158
DRR006523	Root Summer glycyrrhizin low producing strain	81.775
DRR006524	Root Summer glycyrrhizin low producing strain	81.085
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.685
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.149

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.003
SRR2868004	Drought Stress (root)	70.663
SRR2967015	Control (root)	75.401

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.855
SRR9715740	Leaf	28.448
SRR9715741	Leaf	24.021
SRR9715739	Root	14.816
SRR9715742	Root	20.923
SRR9715743	Root	15.628

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.009
SRR8749028	MeJA induced 9h	15.435
SRR8749029	MeJA induced 9h	12.704
SRR8749030	Uninduced	11.616
SRR8749031	Uninduced	10.113
SRR8749032	Uninduced	6.382

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.470
SRR8400027	Control - Root	41.932