Gene detail

Gene detail information of Glyur000001s00000020.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65700.2	0	Leucine-rich receptor-like protein kinase family protein
NR	CBI35733.3	0	unnamed protein product [Vitis vinifera]
COG	YP_004775215.1	5.00E-52	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|O49545\|BAME1_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (Precursor)
trEMBL	tr\|C6ZRW9\|C6ZRW9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G16780.1}

Sequence

Transcript Sequence

>Glyur000001s00000020.1
ATGAGACTCCTGCCATGGTTGTTGGTAGTGCTGTTCTTGTTGGAGTTGGTTTCGGCGGGTCGAATCTCAGAGTACCGCGCTCTTCTCTCATTCAAAGCATCTTCCATCAGCGACGACCCCACCCACGCCCTCTCCTCATGGAACACCACCACACACTGCTCTTGGCACGGCGTCACATGTGGCCCCCGCCGCCACGTCACCGCCCTCGACCTCTCCTCCCTCTCCCTCACCGGCACACTCACCGACGACTTCTCCGGCCTCCCCTTCCTCTCCCACCTCTCCCTCGCCGATAACAAGTTCTCCGGCCCCATCCCTCCTTCCCTCTCTTCCTCCCTCCGCTTCCTCAACCTCTCCAACAACGTCTTCAACGGCACTTTCCCTTCTCAGCTCTCACGCCTCCAAAGCCTTCAGGTCCTCGACCTCTACAACAACAACATGACCGGCACTCTCCCCCTCGCCGTCACCCACATGACCTCTCTCCGCCACTTGCATCTCGGCGGCAACTTCTTCTCCGGTAGTATTCCGCCGGAGTACNGCTCTTGGCCCCACATCGAGTATCTTGCCGTCTCCGGCAACGAACTCGCCGGCCCCATTCCCCCGGAGATCGGCAACCTCACCACCCTCCGGGAGCTCTACATTGGCTACTACAACACCTACGACGGNGGCATCCCGCCGGAGATCGGAAACCTCACGTCTCTGGTCAGGCTCGACGCCGCTTACTGTGGATTGTCCGGCGAGATTCCGCCGGACCTTGGTAGACTTCAGAACCTNGACACCCTGTTCCTCCAGGTGAATGCGCTTTCGGGGTCACTCACGCCTGAGNTCGGGAACCTGAAGAGCCTCAAGTCCATGGATTTGTCCAACAACATGCTCGCTGGCGAGGTCCCAGCGAGCTTCGCGGAGCTGAAGAACCTAACCCTTTTGAACCTGTTCAGGAACAAACTTCACGGGGCGATTCCAGAGTTCGTCGGAGAGATGCCGGCGCTGGAGGTGCTTCAGCTCTGGGAGAACAACTTCACCGGTAGCATTCCTCAGAGTTTGGGGAGGAATGGGAGGCTCACTCTTGTTGATCTTTCCTCAAACAAACTCACTGGGGCTCTTCCCCCTGATATGTGTTATGGGAATCGTCTTCAGACTCTGATAACTCTGGGGAATTTCCTTTTTGGTCCCATCCCCGACTNGCTTGGAAAGTGTGAGTCTTTGANTAGGATTCGNATGGGAGAGAACTTTCTGAATGGGTCTATCCCAAAGGGCCTTTTTGGGCTTCCGAAACTTTCCCAGGTTGAGCTTCAGGACAATCTTCTCTCTGGCCAGTTCCCTGAGGCTGGTTCCATGTCACCCAACCTTGGTCAGATTACTCTCTCCAACAACAAGCTTTCTGGGCCGTTGCCACCCACCATTGGGAACTTCACCAGTATGCAAAAGCTACTCCTTGATGGAAACCAGTTCACGGGTCGAATCCCTCCTCAGATTGGGAGGTTGCAGCAGCTCTCCAAGATAGATTTTAGCCACAACAAGCTCTCGGGTCCTGTTGCGCCTGAGATCAGTCAATGCAAGCTGTTGACTTTCGTTGATCTTAGCCGCAATGAGCTCTCTGGTGAGATCCCAAATGAGATCACTGGCATGAGGATATTGAACTACTTGAACCTTTCAAGGAACCACCTTGTTGGTACTATTCCAGGGTCTATTGCNTCTATGCAGAGTTTGACTTCTGTTGATTTCTCATACAACAACCTCTCTGGTCTTGTTCCTGGTACCGGCCAGTTCAGCTACTTTAACTACACGTCTTTCCTTGGTAACCCTGAGCTCTGTGGCCCTTATTTGGGTCCTTGCAAAGACGGGGTTGCCAATGGCCCTCACCAGCCTCACGTTANAGGACCACTCTCTCCTAAAATGAAGCTCCTTCTTGTGATTGGGTTGCTTGTGTTCTCCATTGCATTTGCTGCTGTGGCAATATTCAAAGCCAGGTCNCTCAAGAAGGCCAGTGAGGCACGTGCTTGGAAATTGACTGCATTCCAGCGTTTGGATTTCACTGTTGATGATGTTTTGGATTGCTTGAAGGAGGACAACATAATAGGGAAAGGGGGTGCTGGCATTGTTTACAAGGGTGCAATGCCCAATGGGGATCAGGCTGCTAAGGGGCTTTGCTATCTACACCATGACTGTTCACCACTTATTGTCCACCGAGATGTGAAATCAAACAACATCCTTCTAGATTCCAGTTTTGAAGCCCATGTTGCTGATTTTGGGCTTGCTAAGTTCCTNCAAGATTCCGGAACCTCTGAATGCATGTCTGCTATTGCCGGTTCTTATGGATACATAGCTCCAGAGTATGCCTACACGTTGAAAGTTGATGAGAAAAGCGATGTGTACAGCTTTGGGGTGGTTCTTTTAGAGCTTGTAACAGGAAGGAAACCAGTTGGGGAATTTGGTGATGGGGTGGACATTGTGCAGTGGGTTAGAAAAATGACGGACTCAAACAAGGAAGGTGTTCTGAAAGTTCTTGATCCTAGACTTCCCTCGGTACCACTTCATGAGGTGATGCATGTTTTCTATGTAGCAATGCTATGTGTTGAAGAACAAGCAGTAGAGAGACCAACTATGCGTGAAGTTGTTCAAATTCTGACAGAGCTTCCAAAACCACCCAACTCAAAACTTGGAGACATAACAATCACGGAATCCTCATTGTCATCATCAAACAGTTTAGAGTCTCCAACCACGGCATCTAAAGAACCTAAAGATCATCAACAACATCCTCCTCAGTCACCACCACCTGATCTTCTTAGCATATGAAGTGCGATTGGGGGTTGTTTGTCTTTATTTCCTTTGGGTTGTGATAGCTTGTTCATTTGCTTTTTTTTTTCTTCTGTTTTTTTTTCTTATGTCGGGTGGGGTTCTTTTTTCTCTAACTAATGTTTGGATATTTCTTATGGTTTTGTAATTTGTACAGTAGGATTGGTTGGAGTATTTTCTCTTATTTCTTATTATGATAATGTCTGTCTTCATCGCGTAGCACTTAGCCTGTGTTTGGAACGAGTGATTTAGCGAAAAGAGAAGCAGGAACGAGAGAAGTAGGAAAGAGAGAAGGGGAGCTACGTGTTTGGTTCATCAAAGAAATGGGAAAGAGAGATAAAAACAAGTGGGATCTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	124066	127975	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000020.1	PF08263.7	LRRNT_2	23	60	8.00E-11
Glyur000001s00000020.1	PF13855.1	LRR_8	110	168	2.60E-07
Glyur000001s00000020.1	PF13855.1	LRR_8	520	579	2.90E-08
Glyur000001s00000020.1	PF00069.20	Pkinase	710	871	2.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	156.196
SRR1783600	control	154.351
SRR1783602	moderate drought stress	126.531
SRR1811619	moderate drought stress	123.722

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.745
DRR006520	Root Summer glycyrrhizin high producing strain	70.283
DRR006521	Root Winter glycyrrhizin high producing strain	10.401
DRR006522	Root Winter glycyrrhizin high producing strain	9.946
DRR006523	Root Summer glycyrrhizin low producing strain	26.538
DRR006524	Root Summer glycyrrhizin low producing strain	26.204
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.029

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	76.891
SRR2868004	Drought Stress (root)	58.256
SRR2967015	Control (root)	75.825

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.628
SRR9715740	Leaf	7.625
SRR9715741	Leaf	6.906
SRR9715739	Root	100.029
SRR9715742	Root	136.860
SRR9715743	Root	126.808

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.643
SRR8749028	MeJA induced 9h	3.675
SRR8749029	MeJA induced 9h	3.148
SRR8749030	Uninduced	0.030
SRR8749031	Uninduced	0.024
SRR8749032	Uninduced	0.193

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	124.663
SRR8400027	Control - Root	132.892