Gene detail information of Glyur000001s00000007 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17800.1 | 4.00E-63 | Predicted AT-hook DNA-binding family protein |
| NR | XP_007155775.1 | 5.71E-138 | hypothetical protein PHAVU_003G230600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 3.00E-48 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|V7CCB2|V7CCB2_PHAVU | 2.00E-138 | Uncharacterized protein {ECO:0000313|EMBL:ESW27769.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 29586 | 30473 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000007.1 | PF03479.10 | DUF296 | 105 | 220 | 2.70E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.586 |
| SRR1783600 | control | 24.828 |
| SRR1783602 | moderate drought stress | 29.855 |
| SRR1811619 | moderate drought stress | 29.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.069 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.693 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.953 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.950 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.530 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 93.302 |
| SRR2868004 | Drought Stress (root) | 107.645 |
| SRR2967015 | Control (root) | 103.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.129 |
| SRR9715740 | Leaf | 0.115 |
| SRR9715741 | Leaf | 0.158 |
| SRR9715739 | Root | 214.954 |
| SRR9715742 | Root | 83.496 |
| SRR9715743 | Root | 102.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.342 |
| SRR8749028 | MeJA induced 9h | 36.132 |
| SRR8749029 | MeJA induced 9h | 22.805 |
| SRR8749030 | Uninduced | 15.181 |
| SRR8749031 | Uninduced | 14.043 |
| SRR8749032 | Uninduced | 17.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 52.476 |
| SRR8400027 | Control - Root | 41.747 |