Gene detail

Gene detail information of Glyur000001s00000006

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17950.1	5.00E-48	AT hook motif DNA-binding family protein
NR	XP_004509026.1	1.53E-155	PREDICTED: putative DNA-binding protein ESCAROLA-like [Cicer arietinum]
trEMBL	tr\|V7CEI0\|V7CEI0_PHAVU	1.00E-143	Uncharacterized protein {ECO:0000313\|EMBL:ESW27768.1}

Sequence

Transcript Sequence

>Glyur000001s00000006.1
ATGGATTCTCGTGTACCGCCGCACACCACCATGATGGCGGGACCCACCTCCTACGCTCCCACCAACTCCTCCTCCATGATCAGCCCTAATCCCTCCTCCTCCATGATGCCCCACGGCTCCGCCCGCTTCCCCTTCGCCTCGTCGGAGCCCTTCGCCGCCGCCCAACACGACGGCCCCACCTCTCCCTCCGCCCTCGCCAAGAAGAAGCGTGGCCGCCCCAGGAAGTACTCCCCCGACGGTAACATTGCCCTCGGCCTCGCCCCCACTCACGCTTCCCCTTCCTCCGCCCCCGCCGCCGGCGACTCTGGCGCCTCCNATGCTCCGCCGAAGAAGCACCGGGGAAGGCCTCCGGGGTCTGGGAAGAAGCAGTTGGATGCGCTTGGAGCTGGTGGGGTTGGATTCACTCCGCACGTAATATTGGTGGACTCTGGTGAGGACATTGCAGCAAAAATTATGGCCTTTTCTCAACAAGGGCCACGGACAGTTTGTATTCTTTCTGCCAGTGGTGCAATCTGCAATGGCCGATTTGAAATTATATCGTTATCAGGTGCATTGAAGCTATCTGAAAATAATGGTGAACATAGCAGAACAAGCAGTTTGTGTGTTTCCGTTGCAGGGTCTGATGGACGAGTCTTGGGCGGNGGAGTTGCTGGAATGCTAACTGCAGCATCACCTGTACAGGTTATTGTGGGTAGCTTTATCGTGGATGGGAAAAAGTCAAGCTNAAATATGCTGAAATCCGGGCATTCTTCAGCACCAGCCTCCCAAATGTTGACCTTTGGTGCACCTACTTCCCCTACTAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCGGAGGACAATGATCATGGTCCTTTTAATAATAGGGGGCCTGGACTCTACAATAATGCTAGTCAACATGTTCATAATATGCAGATGTACCATCATCCATTATGGGCTGGCCAAACTCATCAGTGAAGATGTGACTTTGGGTTAACAGTGCAGAATCAGGGTATTTTGCTTGGTGATTGTTCAAAGTAGTGGCTAGAGGTCGATTCTAAAATGCTAACATGGGTTATTGAGGGACTGACTGTAGAACAGTCTATCTTAAGGTTTAAGCTTATTTCTCCATCGTTCTGTTGATTAGGACCCTTATTTTGTCTTTTGATTACTATAATCGTAGCTTTTCCAGTGATGATAGCCAAGGATATGCTACCATTACCCGAATCCTGTCATTTTGGAATTTGTTGTCTGCACTCTGCAGTAGGATGGCAAAATCAGGATCTGTGCTTTCACTCATTCATCATTATGCTTCATTGTTTTGTTTAATTCTTGAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	14493	18192	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000006.1	PF02178.14	AT_hook	67	78	0.017
Glyur000001s00000006.1	PF02178.14	AT_hook	110	121	33
Glyur000001s00000006.1	PF03479.10	DUF296	134	172	2.90E-09
Glyur000001s00000006.1	PF03479.10	DUF296	173	234	1.40E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.307
SRR1783600	control	10.228
SRR1783602	moderate drought stress	7.417
SRR1811619	moderate drought stress	7.758

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.412
DRR006520	Root Summer glycyrrhizin high producing strain	9.096
DRR006521	Root Winter glycyrrhizin high producing strain	1.545
DRR006522	Root Winter glycyrrhizin high producing strain	1.408
DRR006523	Root Summer glycyrrhizin low producing strain	11.600
DRR006524	Root Summer glycyrrhizin low producing strain	11.697
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.110

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.605
SRR2868004	Drought Stress (root)	7.312
SRR2967015	Control (root)	9.765

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.226
SRR9715740	Leaf	2.099
SRR9715741	Leaf	2.102
SRR9715739	Root	10.611
SRR9715742	Root	10.792
SRR9715743	Root	9.729

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.378
SRR8749028	MeJA induced 9h	7.324
SRR8749029	MeJA induced 9h	8.377
SRR8749030	Uninduced	0.679
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.562

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.958
SRR8400027	Control - Root	11.011