Gene detail

Gene detail information of Glyur000001s00000003

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32550.1	2.00E-34	2Fe-2S ferredoxin-like superfamily protein
NR	XP_004509024.1	7.54E-72	PREDICTED: ferredoxin-2-like [Cicer arietinum]
COG	YP_007131975.1	6.00E-25	ferredoxin (2Fe-2S) [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|P94044\|FER6_MAIZE	3.00E-12	Ferredoxin-6, chloroplastic (Precursor)
trEMBL	tr\|I1MVE7\|I1MVE7_SOYBN	1.00E-64	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G16610.1}

Sequence

Transcript Sequence

>Glyur000001s00000003.1
GTTTTGATGACCGTACACGTGTCCAGCGATGGTTGGAATAGAATCAAACGCGTCCGTTGAGAGCGCGCGTGTTGTCGCTCTTGTTATCCCGTCACTGTGTGTGCGTGTCAGCACTTGAAGAAGAAGAAGAAGAAGAAGAAGAACAACAACAACAACAACAACAACATGGCGCTACCCCTTCTTCGAATTCCCGGTAGTTGCTGCATTCCATTTACCAAGCCGCAATCTTTTGCTTCCAAGAGCCTCCGCAAGACGACGGTGGCGGCGGCGGAGCTTCAAACGCCGGTGGGAGTGACGGGTGGAACCGGTTACCAGTCTCAGCGTGTTGATGTTCCAATCCATAAGGTCACAGTCCACGACAGACAACGAGGANCTGTTCACGAATTCCTCGTACCTGAGGACCAGTATATATTACATACTGCTGAGTCCCAGAATATTATCCTTCCGTTCGCCTGCAGGCATGGTTGTTGTACTAGCTGTGCTGTACGTATAAAGAATGGGCAGATTAGACAGCCAGAGGCACTTGGGATATCTGCCGAATTGAGAGATAGGGCACGTNCAACTATCTTTATTCTATAGGAGAGGAGAGGAGAGGAGGAAGAAGTGGGTTATGCACTTCTTTGTGTGGGCTTCCCATCCACTGATGTTGAAGTAGAAACTCAAGATGAAGATGAGGTATATTGGCTTCAATTCGGACGTTATTTTGCTCGAGGACCAGTGGAAAGAGATGACTATGCGTTGGAGTTGGCCATGGGTGACGAGTAAGCAACGTAGAAAATCTGACATGCAGTGGGGCGAACGTTGCGGATTTTGTTTCCTCGTATTGTTTTTTTCTTCTATGTGCTCTGTATGTTTTTCACTATTACTGTGCAAAATCCAAATAAAGCACCACGCTACATATACACCTCCACACTCCACGGTTATCATTTGCATAGTATAGAAGATTTAGTGCCTGTGTGTATTGGCTTCCAACCCACTATGTACGCCCATTGCAGTGTATGNGTGTAAGGAAAAGCTTTTTGCTCTCATGTTTAATGCTTTGAATGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00001	5368	9359	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0009055 electron carrier activity

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000001s00000003.1	PF00111.22	Fer2	71	128	2.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.039
SRR1783600	control	51.134
SRR1783602	moderate drought stress	51.580
SRR1811619	moderate drought stress	50.877

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.921
DRR006520	Root Summer glycyrrhizin high producing strain	55.351
DRR006521	Root Winter glycyrrhizin high producing strain	12.802
DRR006522	Root Winter glycyrrhizin high producing strain	12.266
DRR006523	Root Summer glycyrrhizin low producing strain	33.906
DRR006524	Root Summer glycyrrhizin low producing strain	34.008
DRR006525	Leaf Summer glycyrrhizin high producing strain	212.483
DRR006526	Leaf Summer glycyrrhizin high producing strain	211.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.774
SRR2868004	Drought Stress (root)	28.340
SRR2967015	Control (root)	21.996

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	143.281
SRR9715740	Leaf	180.971
SRR9715741	Leaf	119.027
SRR9715739	Root	37.474
SRR9715742	Root	39.059
SRR9715743	Root	38.569

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.850
SRR8749028	MeJA induced 9h	13.355
SRR8749029	MeJA induced 9h	12.848
SRR8749030	Uninduced	20.032
SRR8749031	Uninduced	5.159
SRR8749032	Uninduced	10.371

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.821
SRR8400027	Control - Root	76.621