Gene detail

Detail information of GWHGAAZE033048

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011028448.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X2 [Populus euphratica]
COG	YP_004775215.1	1E-31	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LT96\|Y5977_ARATH	2E-165	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|A0A059BA58\|A0A059BA58_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW62550.1}
TAIR10	AT5G49760.1	1E-155	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000089	gene	103467	115392	+
GWHAAZE00000089	mRNA	103467	115392	+
GWHAAZE00000089	exon	103467	103555	+
GWHAAZE00000089	exon	103884	103958	+
GWHAAZE00000089	exon	104037	104108	+
GWHAAZE00000089	exon	104773	104934	+
GWHAAZE00000089	exon	105030	105104	+
GWHAAZE00000089	exon	105655	105726	+
GWHAAZE00000089	exon	105826	105897	+
GWHAAZE00000089	exon	106514	106648	+
GWHAAZE00000089	exon	107311	107792	+
GWHAAZE00000089	exon	108140	108301	+
GWHAAZE00000089	exon	114688	114824	+
GWHAAZE00000089	exon	115153	115392	+
GWHAAZE00000089	CDS	103467	103555	+
GWHAAZE00000089	CDS	103884	103958	+
GWHAAZE00000089	CDS	104037	104108	+
GWHAAZE00000089	CDS	104773	104934	+
GWHAAZE00000089	CDS	105030	105104	+
GWHAAZE00000089	CDS	105655	105726	+
GWHAAZE00000089	CDS	105826	105897	+
GWHAAZE00000089	CDS	106514	106648	+
GWHAAZE00000089	CDS	107311	107792	+
GWHAAZE00000089	CDS	108140	108301	+
GWHAAZE00000089	CDS	114688	114824	+
GWHAAZE00000089	CDS	115153	115392	+

Transcript Sequence
>GWHTAAZE033087 ATGACATTCAACTCCAGAACATTATCAAGCTTGAGTTTGACTGGTACACTATCCGGAGACATCGAGAATTTATCTGAATTGCAGACTCTGGATCTGTCATACAATAAAGGTTTGACTGGATCTATTCCTCCATCAATTGGAAATTTGAGGAAGTTATCAAACTTAATCCTGGTTGGTTGCGGTTTCACTGGTCCAATTCCAGACTCGATAGGATCTCTTCAGCAGCTGGTCTATTTGTCTCTAAATAGTAATGGCCTCAGTGGACCAATACCGCCTTCAATTGGTAATCTAAATAATCTTTATTGGTTGGATTTGGCCGATAATAAGCTTAGCGGACCAATACCAGTTTCTAATGGAATCAGGCCAGGACTTGATATGCTGGTTAAAACAAAGCACTTTCATTTTGGAAATAATCGGCTTTCTGGTGAGATCCCAAGTCGGCTCTTCAGCTCGTCTTTGAAGTTGATACATCTGCTTTTAGAAAACAACCAGCTCACCGGCAGCATCCCTTCCACACTGGGACTAGTCAAGACCTTGGAGGTCGTTCGACTCGATAGGAATTCGTTTACTGGACCTGTTCCATCAAACATCAACAACCTTAGCAGTGTCAGTGATCTTGTATTGAGAAATAACCAGCTTAATGGCATCTTGGATATTGGGTCCACCTATAGCAACCAACTTCAAGAGGTTGACTTGCAGAATAATCTCATCAGTGGCTTCACAGAAAGGGTGGGATACCATATTGGGTTAAAACTTGCTGGTAACCCTGTTTGTGAGGAAAGAGTAATAGACAAAAAATACTGTAATGTTACTCAACGGCCTAATGGCTGGTATTCGACATTACCAAGAAATTGTGTGCCTAGTACCTGCAGGTCAGAGCAAATTTCGAGCCCAAATTGTCAATGTGCATATCCGTACACAGGGAAATTATCATTTAGAGCTCGAAAGTTTTCCAGCCTGGGAAATTCGAGTATTTACATTTCTCTTCAAGAATCTATGATGGTTTCTTTTCAGTCCCATCGACTCCCAGTGGATTCGGTCTCTCTGAAGAACCCGACGACAGATCCTGACGATTACCTTGTAATAAGCCTTGAAATTTTTCCATTCGGCCAAGATTATTTCAATCGAACAGGAGTTAGTGCGATTGGATTTGTGCTTAGCAACCAAACTTTTAAGCCTCCCTCAGATTTTGGACCTTTTTTTTTCATCGGTGACGGCTATCAGTACTTTTCAGGTCCTAGAACAGCACACAAGTCATCATCAAATACTGGCATTATCATTGGAGCTGCTGCTGCTGTTGGTGCTGGCCTTTTGCTATTACTATTACTTGCAGGATTTTACGCTTATCGTCAAAAGAAAAGGGCTGAAAGAGCTGATCATCAGAACAATCCCTTTGCATTGTGGGACCCAAGTAAAAAAAGTGGCGGTGTTCCTCAGTTGAAAGGAGCAAGGTCTTTCTCATTTGAAGAGCTTAATAAATACACAAATAATTTTTCAGAAACCAACAATATAGGATCTGGTGGGTACGGAATGGTATATAGAGGAAATCTTCCCAATGGGCAACTGATTGCCATTAAAAGAGCCGTACAAGGGTCTAAGCAGGGTGGCCTCGAGTTTAAAAATGAGCTTGAGCTCCTTTCGCGGGTTCATCACAAAAATGTTGTCAGCCTCGTGGGTTTCTGTTTCGAGCAAGGTGAACAGATGCTGATATATGAGTTTATTCCAAATGGTACACTCAAGGACAGTCTTTTAGGTACTTCCACTCATTCATAA

Network for GWHGAAZE033048

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	27	49	1.3
PF07714.18	PK_Tyr_Ser-Thr	501	583	2.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.609
	SRR3591706	second leaf	4.834
	SRR3591707	mature leaf	22.556
	SRR3591708	Shoot apex	2.936
	SRR3591709	Stem	7.549
	SRR3591710	White floral bud	0.080
	SRR3591711	White flower	1.017
	SRR3591712	Green floral bud	0.059
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.854
	SRR8316896	Juvenile bud stage	1.265
	SRR8316897	Juvenile bud stage	0.348
	SRR8316894	Third green stage	0.304
	SRR8316900	Third green stage	0.123
	SRR8316901	Third green stage	0.269
	SRR8316898	Complete white stage	0.065
	SRR8316899	Complete white stage	1.337
	SRR8316903	Complete white stage	0.134
	SRR8316902	Silver flowering stage	0.113
	SRR8316904	Silver flowering stage	0.238
	SRR8316905	Silver flowering stage	0.162
	SRR8316906	Gold flowering stage	0.154
	SRR8316907	Gold flowering stage	0.061
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.917
	SRR6706287	Light intensity 50%	0.609
	SRR6706288	Light intensity 20%	0.561
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.919
	CNS0095593	Slightly white alabastrum(diploid) 2	0.465
	CNS0095594	Slightly white alabastrum(diploid) 3	0.441
	CNS0095595	Whole white alabastrum(diploid) 2	0.266
	CNS0095596	Whole white alabastrum(diploid) 3	0.112
	CNS0095597	Whole white alabastrum(diploid) 4	0.426
	CNS0095598	Silvery flower (diploied) 1	1.460
	CNS0095599	Silvery flower (diploied) 2	1.967
	CNS0095600	Silvery flower (diploied) 3	0.809
	CNS0095601	Golden flower (diploid) 1	2.097
	CNS0095602	Golden flower (diploid) 2	1.856
	CNS0095603	Golden flower (diploid) 3	2.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.735
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.445
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.648
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.701
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.097
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.196
	CNS0095610	Silvery flower (tetraploid) 1	0.823
	CNS0095611	Silvery flower (tetraploid) 2	1.046
	CNS0095612	Silvery flower (tetraploid) 3	0.150
	CNS0095613	Golden flower (tetraploid) 1	0.103
	CNS0095614	Golden flower (tetraploid) 2	1.020
	CNS0095615	Golden flower (tetraploid) 3	0.151
CRA001975	CRR073297	Stem 1	0.956
	CRR073298	Stem 2	0.898
	CRR073299	Stem 3	0.822
	CRR073300	Leaf 1	0.540
	CRR073301	Leaf 2	0.218
	CRR073302	Leaf 3	0.472
	CRR073303	Juvenile bud 1	0.107
	CRR073304	Juvenile bud 2	0.022
	CRR073305	Juvenile bud 3	0.560
	CRR073306	Third green 1	0.106
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.149
	CRR073309	Second white 1	0.313
	CRR073310	Second white 2	0.069
	CRR073311	Second white 3	0.019
	CRR073312	Silver flowering 1	0.092
	CRR073313	Silver flowering 2	0.014
	CRR073314	Silver flowering 3	0.069
	CRR073315	Gold flowering 1	12.875
	CRR073316	Gold flowering 2	31.844
	CRR073317	Gold flowering 3	12.499
	CRR073318	Tawny withering 1	2.908
	CRR073319	Tawny withering 2	3.008
	CRR073320	Tawny withering 3	1.169