Gene detail

Detail information of GWHGAAZE030999

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008244741.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51860 isoform X2 [Prunus mume]
COG	YP_001195582.1	0.0000001	leucine-rich repeat-containing protein
Swissprot	tr\|O65924\|Y2921_ARATH	0	Putative leucine-rich repeat receptor-like protein kinase At2g19210 (Precursor)
trEMBL	tr\|V4RYG9\|V4RYG9_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR40073.1}
TAIR10	AT4G29990.1	0	Leucine-rich repeat transmembrane protein kinase protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51579978	51584234	+
GWHAAZE00000009	mRNA	51579978	51584234	+
GWHAAZE00000009	exon	51579978	51580065	+
GWHAAZE00000009	exon	51580159	51580714	+
GWHAAZE00000009	exon	51581026	51581501	+
GWHAAZE00000009	exon	51581617	51581755	+
GWHAAZE00000009	exon	51581846	51581917	+
GWHAAZE00000009	exon	51582037	51582108	+
GWHAAZE00000009	exon	51582203	51582283	+
GWHAAZE00000009	exon	51582507	51582673	+
GWHAAZE00000009	exon	51582764	51582840	+
GWHAAZE00000009	exon	51583139	51583265	+
GWHAAZE00000009	exon	51583354	51583416	+
GWHAAZE00000009	exon	51583522	51583545	+
GWHAAZE00000009	exon	51583651	51583711	+
GWHAAZE00000009	exon	51583817	51584234	+
GWHAAZE00000009	CDS	51579978	51580065	+
GWHAAZE00000009	CDS	51580159	51580714	+
GWHAAZE00000009	CDS	51581026	51581501	+
GWHAAZE00000009	CDS	51581617	51581755	+
GWHAAZE00000009	CDS	51581846	51581917	+
GWHAAZE00000009	CDS	51582037	51582108	+
GWHAAZE00000009	CDS	51582203	51582283	+
GWHAAZE00000009	CDS	51582507	51582673	+
GWHAAZE00000009	CDS	51582764	51582840	+
GWHAAZE00000009	CDS	51583139	51583265	+
GWHAAZE00000009	CDS	51583354	51583416	+
GWHAAZE00000009	CDS	51583522	51583545	+
GWHAAZE00000009	CDS	51583651	51583711	+
GWHAAZE00000009	CDS	51583817	51584234	+

Transcript Sequence
>GWHTAAZE031033 ATGGAGATATTAAAATGTCTCCTCCTTGCATTCCTTACTGGTTTTGCTGTCACAGTACTTGTCGTTCATGCCCAAGATGATCAATCAGGTTTCATAAGCTTAGACTGTGGATCACCAAAAGATTCAGAATACACTGACAAAACAACGGGCATTAATTACATTTCGGACTCGAGTTTCATAGAGAGTGGTTTAAGTAAGACGATATCACCTTCCTACCAGACCGACTCCGTTCTACAGCAGTTCTCGAATCTTAGAGCATTTCCTCAAGGAACCCGAAACTGCTACACACTAAGGCCTCCACAAGGGAAGGGCAACAAGTATTTGATAAGGGCAAGTTTCTTGTATGGGAATTATGATGCTAAAAACCAACTCCCCAATTTCGATCTGCATTTGGGTGTCGATAAATGGGAGGCCGTCGTGATCGAAGATGCAGCCACTCCAACAGTGGCTGAGATTATTCACTTTCCTGCAACAGATTATATTAATGTTTGTCTTGTGAAGACAGGTCTTTCAACACCCTTCATATCAACATTAGAGCTTAGGGTTTTGAATAATACAAATACCATGTATAGAACAAAATCTGGATCCCTACAACTCTTCGTTCGCTTGAATTTCGACTTGGAAACCAAGTTGCAATCCGTCAGGTACAAAGATGATTTATACGATCGGATATGGTCTCCTTATGCATTTTCAAATGTAACAACAATAAGTACAATATCCGATATTTCGTACAACATTTACCAAGTACCATCTGCTGTAATGAGGACTGCCAACACCCCACTGAATGCTAGTGAGCCCTTGCAATTCTATTGGGAGACTAAGAACAGCTCCGATCAATATTATGTGTACATACACTTTGCTGAGCTTGTACCGCCAAAAGCCAACCAATCAAGAGAATTTAACCTTTACCTAAACAACAAATTATGGTACGAAGATGGACCGATAATTCCTCGTTATTTAGTTACAAACACAATCTACAGCAATTTACCGTCGACTGGAAGTTTACGGTATGATGTTTCAATCAATAAAACAGCGACTTCAACACTTCCCCCTCTCATCAATGCCCTAGAGATATTTGAAGTCAAACAATTCCCACATATGGAAACAGATGAAACAGATGTCTCAGCTATGTTGAGCATCAAGTCAATGTATGAACTAACAAGAAACTGGCAAGGTGATCCGTGTGCACCTCAAGTTTTTGTCTGGGATGGTCTCAACTGTAGTTACGATGGTTTCCAGCCGCCAAGAATCACATCCTTGAACTTGTCTTCAAGCGGATTGAATGGGGTGATAGCTCCTTCCATATCAAATCTCACATTGATAGAAAATTTGGATTTATCAAACAATAACTTAACTGGAGGAGTTCCAGATTTTCTAAGTCAACTGACTTCCTTGAAGACCATAAACTTGAAAGGAAATAACTTCACAGGGTCAATTCCAGGACAACTCCTCGAGAAGTCAAACAAAGGATTGTTATCATTAAGTGTCGATGGTATGGACAGTGATACAAATCCATGTAAATCTGGCTCATGCAAAAAGAAAAAGACCCGAATTGCAGTCCCGGTAGTAGCAGCAGTCGTCGCTGCTGTTTCATTTTTGCTATGTGCTGCATTGGTTACATTGTGGGTGATTAAAAAGAGGAAACAGCAAGGAGGGAAAGTGGATGTCGAATCAAACAGAAAGGACGGAATGTTGGAGACAAAGAATCGACAATTTACATACTCAGAGGCCAGCCTTCTTATGAGTGTTCATCATAAAAACCTAAGTACTCTTGTTGGGTACTGCAATGAAGGTACTAACATGGGAATCATCTACGAGTATATGGCAAATGGAAACCTCGACCAGCATCTCTCAGATAAAAATTTATACGCTCTGGGTTGGGAAGAGAGACTTCGAATAGCAACTGACTCAGCACAAGGTTTGGAGTATTTACACCATGGTTTTGAAGGTGACACGCATGTCTCCACAGTAGTTGCTGGCACTCCTGGCTATCTTGACCCCGAGTATTACACATCAAATAGATTAACAGAAAAAAGTGACGTGTACGGATTTGGGATTGTTCTGTTGGAAATAATTACTGGGCGTCCAGCGATAGCAAAAACACAAGAAAGGACACACATAATTCAATGGGTTACTTCAACGCTTCAAAATGGGGACGTTAGCAACATCATGGATCCGAGGTTAAAGGGAGATTTTGACGTTAATTCTGCCTGGAAAGCTGTGGAATTAGCAATGGCTTGTGCATCTCGAATTTCCACAAAAAGGCCAACCATGAATGCGGTTGTGATGGAATTAAAAGAATGTTTGGCAACAGAGATGGCTCTCCGCAACAATGAAGAGATATCATACACAGAATCAAAGGACTCGAATGGCTTGATGTCTATGAATATGGAGAGTGGAATGGGTCCGGGCGCAAGGTAG

Network for GWHGAAZE030999

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	34	361	4.00E-111
PF13855.7	LRR_8	415	475	7.00E-07
PF07714.18	PK_Tyr_Ser-Thr	546	646	7.60E-14
PF00069.26	Pkinase	655	762	1.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-I-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.076
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.082
	SRR3591713	Yellow flower	0.066
SRP173429	SRR8316895	Juvenile bud stage	0.230
	SRR8316896	Juvenile bud stage	0.349
	SRR8316897	Juvenile bud stage	1.908
	SRR8316894	Third green stage	0.131
	SRR8316900	Third green stage	0.064
	SRR8316901	Third green stage	0.030
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.237
SRP132670	SRR6706286	Control	0.046
	SRR6706287	Light intensity 50%	0.033
	SRR6706288	Light intensity 20%	0.091
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.656
	CNS0095593	Slightly white alabastrum(diploid) 2	0.680
	CNS0095594	Slightly white alabastrum(diploid) 3	0.616
	CNS0095595	Whole white alabastrum(diploid) 2	0.154
	CNS0095596	Whole white alabastrum(diploid) 3	0.511
	CNS0095597	Whole white alabastrum(diploid) 4	0.228
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.413
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.498
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.499
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.119
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.048
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.257
	CRR073298	Stem 2	0.058
	CRR073299	Stem 3	0.256
	CRR073300	Leaf 1	0.069
	CRR073301	Leaf 2	0.019
	CRR073302	Leaf 3	0.117
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.033
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.025
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.119
	CRR073316	Gold flowering 2	0.001
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.039
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000