Gene detail

Detail information of GWHGAAZE030663

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625201.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g74360 [Nicotiana tomentosiformis]
COG	YP_004775215.1	1E-42	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGJ1\|Y1743_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g74360 (Precursor)
trEMBL	tr\|M1CAM2\|M1CAM2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400063400}
TAIR10	AT1G74360.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46843340	46846542	+
GWHAAZE00000009	mRNA	46843340	46846542	+
GWHAAZE00000009	exon	46843340	46845336	+
GWHAAZE00000009	exon	46845507	46846542	+
GWHAAZE00000009	CDS	46843340	46845336	+
GWHAAZE00000009	CDS	46845507	46846542	+

Transcript Sequence
>GWHTAAZE030697 GAACTAGTTATTGGAGACTCTGTTGAAAATGATAAGCAAATACTGCAAACACTAAAATCGTTTCTTGAAGATCAAAATCACGTGAATCGAGGTAGATACGCCGAATGGGACCCACGGGATTCGTCTCCGTGCAATTGGCCAGGAATTTCATGCACCGGCGGTCGAGTCACCGGAATCGACCTCTCGGGAAACGACATCGCCGGAAAAATCTTCGGAAACTTCTCAACCATGTCGGAGCTCACTTACCTTGACCTCTCAAGAAACTCCCTCGGCGGCGATATTCCGGCTGACCTAGGGCAGTGTGAAAAGCTCAAGCACTTGAATCTCTCACACAACATAATAGATGGGGAGCTCAACTTTACTGGACTGAAAAGTCTTGAAACTCTTGACATTTCCTTGAATAGAATTGGTGGGGATATTCGATTGGCTTTCCCGGTAATTTGTAGTAGTTTGGTGGTTGTGAATATTAGTAGTAACAATTTCACTGGTGAGATTGGGACTAAACTTGATGGGTGTTGGAATTTGCAGTATGTTGATCTTAGTACAAACAATTTGAGTGGGGGTTTAAGGTCGGCGTTTGGGAGGTTTAAGGAATTTGTGGTATCTGAGAATAACTTAACTGGGACAATCCCATCTTGGATTTTCCCGGAAAATTGTAGTTTAGAGGTTTTGGATTTGTCGGAAAATGTTTTCTTGGGGGAGTTTCCGAAGGAGATTTCAAATTGCAAGGATTTGGAGGTGTTGAATTTGTGGGGGAATGGCTTTTCGGGGAAAATCCCGCAAGCTATTGGATCAATCCAGTCTCTTCAGGAACTTTTCTTGGGTAACAATTCGTTTCTCAGGGAAATTCCAGAGACACTACTGGGGTTGAAGAACTTGGTGTTCTTGGATCTAAGCAGGAACAATTTTCAAGGTGATGTACAAGAAATTTTCGGTAGATTCACACAAGTAAATTTTCTTCTTTTACATGACAATTCATACACTGGAGGGTTACTTTCCTCTGGGATTTTAAAGTTACCAAACATTTCTCGGTTAGACTTGAGTTACAACAATTTCTCCGGTTCATTACCGGTTGAAATTTCTCAAATGTTTAGCTTGAAGTACTTGTTTCTTGCCCACAATCAGTTCACTGGAACCATACCACCGGAGTATGGAAATTTGCCCAGACTCCAAGCTCTTGATCTCTCATTCAACCACCTAAATGGGGCAATACCATCGAGTCTTGGAAAGTTAACCTCGCTCTTGTGGTTAATGCTCGCAAATAATTCTTTAACGGGCGAGATTCCACTGGACTTGGGGAACTGTAGCAGCTTGTTATGGTTAAACCTCGAGAATAATCAACTTTCTGGGCCAATTCCCCCACAGTTAATGGATATTGGCAAGAATGTGACACCGACTTTTCTGTTGAATCGTGAGAGTGATCAAATCAGAGCCGGTTCTGGGGAGTGTTTGGCAATGAGAAGGTGGATACCTGCAGATTACCCTCCATTTAGCTTTGTTTATACTCTTCTTACAAGGAAGAGATGCATAAGCCTATGGGATAAGTTGCTCAAAGGGTATGGCCTTTTCCCTGTTTGTGTACCAGGTTCTAATATTCGAACCTTTCAAATATCTGGCTATCTTCAGCTCAGTGGTAACCAGTTATCTGGCGAGGTCCCAAGCGAGATAGGTAAGATGCTCAACTTTAGTATGCTGCATTTGGGGATTAATCAGTTCTATGGTAATTTACCTAAAGAAATTGGACTAATGCCAATTGTAGTCCTCAACATTTCGCTGAACAAGTTTTCTGGCGAAATTCCAGCCCAAATAAGCAACATCAAGTGCTTGCAAAACCTGGACCTGTCTTACAACAATTTCTCTGGTGCATTTCCAACTAGCTTGAATAACTTGACTGATCTCAGCAAGTTCAACATCTCCTATAATCCCTACATCTCTGGCGTAATACCAGAGACTGGGCAATTGGCAACATTTGAGAGATGGTCATATCTTGGAGACCCCCCATCGGATGCACCAGGGTATCTCTTGGAGGATACAAAGAACCAAAATGACTTTGGGTCAAGCTCGGGTGCATCTTCACCGTGGTTATCAGACAATGTTAAGGTCATTCGATTAGACAAACTCTCGTTCACGCATAATGACATTTTGATTGCTACGGGAAACTTTTCGGATGATAGAATTATTGGTAGAGGTGGATCGGGGACAGTGTACCGAGGTCTACTTCCTGATGGGAGAGAAGTAGCTGTAAAGAAGATTCAAAGAGAGGGTATTGAAGGGGAAAGAGAGTTTCGAGCCGAAATGGAGGTTTTAAGTGGAAATGGATTTGGTTGGCCTCACCCAAACCTCGTAACACTATATGGGTGGTGCCTCAACGGGTCAGAGAAACTCTTGGTTTACGAATACATGGAAGGTGGGGGCTTAGAGGATCTTGTTTCGGACCGAACACGGCTCAACTGGCGTAAGCGTATAAATGTAGCCGTTGACATTGCACGCGCATTACTCTTCTTACACCATGAGTGCTTCCCAGCGATTGTGCATAGAGACGTAAAAGCCAGCAACGTGCTCCTTGACAAAGATGGTCGGGCCCGTGTCACTGATTTTGGCCTTGCTCGAGTGGTAGATGCGGGTGGGAGCCACGTCAGCACAATGGTGGCAGGGACAGTGGGGTATGTGGCGCCTGAGTATGGGCAGACATGGCAAGCTACAACAAAGGGGGACGTGTATAGCTACGGGGTGCTAGTGATGGAGCTGGCGACTGGGAGACGGGCTGTGGATGGAGGGGAAGAGTGTTTGGTCGAGTGGGCTCGACGGGTGATGGGAGATGGACGGCGAGCCACCCTACCAGTGGCGCTTTTGGTGTCGGGTCTGGCTGGAGGGGCGGAGGAGTTGAGTGAGTTGCTTAGGATTGGAATAAGGTGTACTGCAGAGGCAGCACAGGGTAGGCCAAATATGAAGGAGGTGTTGGCTATGTTGGTTAGGATATCAACTGGGAACAAAAGGAATTTGAGTTATAATTGTTCTCCTCCCTCTTTGTAG

Network for GWHGAAZE030663

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	9	51	1.50E-07
PF13855.7	LRR_8	59	112	1.90E-07
PF13516.7	LRR_6	125	143	0.36
PF13855.7	LRR_8	245	303	6.00E-07
PF13855.7	LRR_8	388	448	6.10E-07
PF00069.26	Pkinase	722	924	2.80E-44

Protein Sequence

>GWHPAAZE030681
ELVIGDSVENDKQILQTLKSFLEDQNHVNRGRYAEWDPRDSSPCNWPGISCTGGRVTGIDLSGNDIAGKIFGNFSTMSELTYLDLSRNSLGGDIPADLGQCEKLKHLNLSHNIIDGELNFTGLKSLETLDISLNRIGGDIRLAFPVICSSLVVVNISSNNFTGEIGTKLDGCWNLQYVDLSTNNLSGGLRSAFGRFKEFVVSENNLTGTIPSWIFPENCSLEVLDLSENVFLGEFPKEISNCKDLEVLNLWGNGFSGKIPQAIGSIQSLQELFLGNNSFLREIPETLLGLKNLVFLDLSRNNFQGDVQEIFGRFTQVNFLLLHDNSYTGGLLSSGILKLPNISRLDLSYNNFSGSLPVEISQMFSLKYLFLAHNQFTGTIPPEYGNLPRLQALDLSFNHLNGAIPSSLGKLTSLLWLMLANNSLTGEIPLDLGNCSSLLWLNLENNQLSGPIPPQLMDIGKNVTPTFLLNRESDQIRAGSGECLAMRRWIPADYPPFSFVYTLLTRKRCISLWDKLLKGYGLFPVCVPGSNIRTFQISGYLQLSGNQLSGEVPSEIGKMLNFSMLHLGINQFYGNLPKEIGLMPIVVLNISLNKFSGEIPAQISNIKCLQNLDLSYNNFSGAFPTSLNNLTDLSKFNISYNPYISGVIPETGQLATFERWSYLGDPPSDAPGYLLEDTKNQNDFGSSSGASSPWLSDNVKVIRLDKLSFTHNDILIATGNFSDDRIIGRGGSGTVYRGLLPDGREVAVKKIQREGIEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLNGSEKLLVYEYMEGGGLEDLVSDRTRLNWRKRINVAVDIARALLFLHHECFPAIVHRDVKASNVLLDKDGRARVTDFGLARVVDAGGSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSYGVLVMELATGRRAVDGGEECLVEWARRVMGDGRRATLPVALLVSGLAGGAEELSELLRIGIRCTAEAAQGRPNMKEVLAMLVRISTGNKRNLSYNCSPPSL

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.285
	SRR3591706	second leaf	0.533
	SRR3591707	mature leaf	0.479
	SRR3591708	Shoot apex	0.332
	SRR3591709	Stem	1.252
	SRR3591710	White floral bud	0.550
	SRR3591711	White flower	2.450
	SRR3591712	Green floral bud	0.280
	SRR3591713	Yellow flower	8.011
SRP173429	SRR8316895	Juvenile bud stage	0.112
	SRR8316896	Juvenile bud stage	0.108
	SRR8316897	Juvenile bud stage	0.077
	SRR8316894	Third green stage	0.124
	SRR8316900	Third green stage	0.332
	SRR8316901	Third green stage	0.348
	SRR8316898	Complete white stage	0.316
	SRR8316899	Complete white stage	0.340
	SRR8316903	Complete white stage	0.926
	SRR8316902	Silver flowering stage	2.079
	SRR8316904	Silver flowering stage	3.371
	SRR8316905	Silver flowering stage	1.645
	SRR8316906	Gold flowering stage	12.482
	SRR8316907	Gold flowering stage	8.424
	SRR8316908	Gold flowering stage	15.564
SRP132670	SRR6706286	Control	0.383
	SRR6706287	Light intensity 50%	0.491
	SRR6706288	Light intensity 20%	0.434
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.261
	CNS0095593	Slightly white alabastrum(diploid) 2	0.240
	CNS0095594	Slightly white alabastrum(diploid) 3	0.055
	CNS0095595	Whole white alabastrum(diploid) 2	0.281
	CNS0095596	Whole white alabastrum(diploid) 3	0.360
	CNS0095597	Whole white alabastrum(diploid) 4	0.218
	CNS0095598	Silvery flower (diploied) 1	0.693
	CNS0095599	Silvery flower (diploied) 2	0.904
	CNS0095600	Silvery flower (diploied) 3	3.371
	CNS0095601	Golden flower (diploid) 1	1.151
	CNS0095602	Golden flower (diploid) 2	5.793
	CNS0095603	Golden flower (diploid) 3	5.108
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.145
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.365
	CNS0095610	Silvery flower (tetraploid) 1	4.903
	CNS0095611	Silvery flower (tetraploid) 2	2.735
	CNS0095612	Silvery flower (tetraploid) 3	6.183
	CNS0095613	Golden flower (tetraploid) 1	7.043
	CNS0095614	Golden flower (tetraploid) 2	6.511
	CNS0095615	Golden flower (tetraploid) 3	12.492
CRA001975	CRR073297	Stem 1	0.409
	CRR073298	Stem 2	0.516
	CRR073299	Stem 3	0.395
	CRR073300	Leaf 1	0.461
	CRR073301	Leaf 2	0.168
	CRR073302	Leaf 3	0.501
	CRR073303	Juvenile bud 1	0.036
	CRR073304	Juvenile bud 2	0.175
	CRR073305	Juvenile bud 3	0.371
	CRR073306	Third green 1	0.641
	CRR073307	Third green 2	0.444
	CRR073308	Third green 3	0.791
	CRR073309	Second white 1	2.954
	CRR073310	Second white 2	3.159
	CRR073311	Second white 3	5.131
	CRR073312	Silver flowering 1	10.931
	CRR073313	Silver flowering 2	9.145
	CRR073314	Silver flowering 3	9.581
	CRR073315	Gold flowering 1	0.171
	CRR073316	Gold flowering 2	0.072
	CRR073317	Gold flowering 3	0.069
	CRR073318	Tawny withering 1	1.235
	CRR073319	Tawny withering 2	0.666
	CRR073320	Tawny withering 3	0.640