Gene detail

Detail information of GWHGAAZE030464

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007209041.1	1.2992E-159	hypothetical protein PRUPE_ppa002786mg [Prunus persica]
COG	YP_643510.1	3E-22	serine/threonine protein kinase
Swissprot	tr\|Q9SKB2\|SBIR1_ARATH	3E-147	Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (Precursor)
trEMBL	tr\|M5WTY7\|M5WTY7_PRUPE	5E-160	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10240.1}
TAIR10	AT2G31880.1	7E-115	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44048328	44049137	-
GWHAAZE00000009	mRNA	44048328	44049137	-
GWHAAZE00000009	exon	44049120	44049137	-
GWHAAZE00000009	exon	44048328	44049089	-
GWHAAZE00000009	CDS	44049120	44049137	-
GWHAAZE00000009	CDS	44048328	44049089	-

Transcript Sequence
>GWHTAAZE030498 ATGATTGCCATCAAGAAACTCAATGGAGAAGATTCTAAGCTTCTTAACAAGAAAATGCGTCAAGTTCGATCGGAGATTAAAACCGTAGGCCAGATAAGGCACCGGAACCTTCTTTCATTACTAGCCCATGTATCCAAACGCGACTGTCATTATCTTGTATACGAGTTCATGAAGAATGGAAGTTTACAAGACATGTTGAATGAGGTCTCACAAGGGACTAGAGAATTGGATTGGTTGACAAGGCACCGGATCGCACTTGGGATTGCAGCTGGGCTCGAGTATCTCCACATGAACCATTCGCCGCGTATAATTCATCGCGATCTCAAGCCTGGAAATGTCCTATTGGATGATGACATGGAACCTCGAATTGCGGATTTTGGGCTGGCAAAAGCTGTCCCGGATGCTAATACGCATGTCACGACTTCCAACGTAGCTGGTACAGTGGGGTACATCGCGCCGGAGTATCACCAGACGCTCAAGTTCACGGATAAGTGTGATATTTATAGCTTTGGGGTTTTGTTAGGGGTGTTGGTGATGGGAAAGCTACCATCGGATGAGTTTTTTCAGCATACAGATGAGATGAGCTTGGTGAACTGGATGAAAAATGTAATGACGTCGGGTGACCCGAGTAGTGCGATTGATCCTAAGTTGATGGGGAATGGGTTTGAGGAGCAGATGCTTTTGGTTCTCAAGATTGCTTGCTTTTGTACTCTTGAAGATCCGAAAGAGAGGCCTAATAGTAAGGAAGTTAGGTGTATGTTAGATCAGATCAAGCACTAA

Network for GWHGAAZE030464

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	2	249	1.50E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.513
	SRR3591706	second leaf	6.584
	SRR3591707	mature leaf	23.208
	SRR3591708	Shoot apex	0.950
	SRR3591709	Stem	2.555
	SRR3591710	White floral bud	2.762
	SRR3591711	White flower	4.381
	SRR3591712	Green floral bud	4.179
	SRR3591713	Yellow flower	1.229
SRP173429	SRR8316895	Juvenile bud stage	1.577
	SRR8316896	Juvenile bud stage	3.430
	SRR8316897	Juvenile bud stage	1.131
	SRR8316894	Third green stage	0.677
	SRR8316900	Third green stage	2.330
	SRR8316901	Third green stage	2.017
	SRR8316898	Complete white stage	0.399
	SRR8316899	Complete white stage	2.827
	SRR8316903	Complete white stage	1.530
	SRR8316902	Silver flowering stage	1.092
	SRR8316904	Silver flowering stage	1.249
	SRR8316905	Silver flowering stage	0.827
	SRR8316906	Gold flowering stage	3.929
	SRR8316907	Gold flowering stage	2.521
	SRR8316908	Gold flowering stage	5.038
SRP132670	SRR6706286	Control	5.532
	SRR6706287	Light intensity 50%	4.247
	SRR6706288	Light intensity 20%	4.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.050
	CNS0095593	Slightly white alabastrum(diploid) 2	1.889
	CNS0095594	Slightly white alabastrum(diploid) 3	4.556
	CNS0095595	Whole white alabastrum(diploid) 2	1.444
	CNS0095596	Whole white alabastrum(diploid) 3	1.338
	CNS0095597	Whole white alabastrum(diploid) 4	1.918
	CNS0095598	Silvery flower (diploied) 1	6.600
	CNS0095599	Silvery flower (diploied) 2	3.084
	CNS0095600	Silvery flower (diploied) 3	0.676
	CNS0095601	Golden flower (diploid) 1	3.438
	CNS0095602	Golden flower (diploid) 2	4.064
	CNS0095603	Golden flower (diploid) 3	4.088
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.598
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.229
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.582
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.306
	CNS0095610	Silvery flower (tetraploid) 1	1.012
	CNS0095611	Silvery flower (tetraploid) 2	2.075
	CNS0095612	Silvery flower (tetraploid) 3	1.613
	CNS0095613	Golden flower (tetraploid) 1	0.463
	CNS0095614	Golden flower (tetraploid) 2	1.538
	CNS0095615	Golden flower (tetraploid) 3	0.450
CRA001975	CRR073297	Stem 1	4.002
	CRR073298	Stem 2	3.826
	CRR073299	Stem 3	2.292
	CRR073300	Leaf 1	3.724
	CRR073301	Leaf 2	3.905
	CRR073302	Leaf 3	2.726
	CRR073303	Juvenile bud 1	3.131
	CRR073304	Juvenile bud 2	0.659
	CRR073305	Juvenile bud 3	4.413
	CRR073306	Third green 1	0.332
	CRR073307	Third green 2	0.277
	CRR073308	Third green 3	0.886
	CRR073309	Second white 1	1.330
	CRR073310	Second white 2	0.432
	CRR073311	Second white 3	0.368
	CRR073312	Silver flowering 1	0.549
	CRR073313	Silver flowering 2	0.723
	CRR073314	Silver flowering 3	0.091
	CRR073315	Gold flowering 1	18.198
	CRR073316	Gold flowering 2	22.130
	CRR073317	Gold flowering 3	36.036
	CRR073318	Tawny withering 1	5.407
	CRR073319	Tawny withering 2	7.758
	CRR073320	Tawny withering 3	2.852