Gene detail

Detail information of GWHGAAZE029495

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088111.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Sesamum indicum]
COG	YP_001192956.1	9E-31	two component regulator
Swissprot	tr\|Q9LT96\|Y5977_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|K4B1J8\|K4B1J8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g102700.2.1}
TAIR10	AT5G49760.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	24221739	24240799	+
GWHAAZE00000009	mRNA	24221739	24240799	+
GWHAAZE00000009	exon	24221739	24221820	+
GWHAAZE00000009	exon	24224754	24224874	+
GWHAAZE00000009	exon	24225250	24225321	+
GWHAAZE00000009	exon	24225657	24225731	+
GWHAAZE00000009	exon	24225810	24225881	+
GWHAAZE00000009	exon	24234016	24234177	+
GWHAAZE00000009	exon	24234274	24234348	+
GWHAAZE00000009	exon	24235389	24235460	+
GWHAAZE00000009	exon	24235560	24235631	+
GWHAAZE00000009	exon	24235723	24235791	+
GWHAAZE00000009	exon	24236271	24236405	+
GWHAAZE00000009	exon	24236552	24236699	+
GWHAAZE00000009	exon	24237216	24237435	+
GWHAAZE00000009	exon	24237776	24237934	+
GWHAAZE00000009	exon	24238018	24238154	+
GWHAAZE00000009	exon	24238485	24238704	+
GWHAAZE00000009	exon	24239378	24239710	+
GWHAAZE00000009	exon	24240420	24240799	+
GWHAAZE00000009	CDS	24221739	24221820	+
GWHAAZE00000009	CDS	24224754	24224874	+
GWHAAZE00000009	CDS	24225250	24225321	+
GWHAAZE00000009	CDS	24225657	24225731	+
GWHAAZE00000009	CDS	24225810	24225881	+
GWHAAZE00000009	CDS	24234016	24234177	+
GWHAAZE00000009	CDS	24234274	24234348	+
GWHAAZE00000009	CDS	24235389	24235460	+
GWHAAZE00000009	CDS	24235560	24235631	+
GWHAAZE00000009	CDS	24235723	24235791	+
GWHAAZE00000009	CDS	24236271	24236405	+
GWHAAZE00000009	CDS	24236552	24236699	+
GWHAAZE00000009	CDS	24237216	24237435	+
GWHAAZE00000009	CDS	24237776	24237934	+
GWHAAZE00000009	CDS	24238018	24238154	+
GWHAAZE00000009	CDS	24238485	24238704	+
GWHAAZE00000009	CDS	24239378	24239710	+
GWHAAZE00000009	CDS	24240420	24240799	+

Transcript Sequence
>GWHTAAZE029529 ATGCGAGGAGGATTAGGGTTTTTGTGCTGGTTGTTTGCGCTCAATTTTTGGGTTATTGCTGCCGTGACCAACGATAACGATCCTACTTATCTATTGGCTCTAAAGGATATATGGGAGAACACACCACCCAGTTGGGTCGGCACGGATCCATGTGGAGATCGCTGGGAGGGAATTGGTTGCACCAATTCACGTGTTACTTCAATAACATTATCAAGCTTGAGTTTGACTGGTAAACTATCCGGAGACATCGAGAATTTATCCGAATTGCAGACTCTGGATTTGTCATACAATACAGGTTTGACTGGATCTATTCCTCCATCAATTGGAAATTTGAGGAAGTTATCAAACTTAATCCTGATTGGTTGCGGTTTCACCGGTCCAATTCCAGATTCGATAGGATCTCTTAAGCAGCTGGTCTATTTGTCTCTAAATAGTAATGGCTTCAGTGGACCAATACCGCCTTCAATTGGTAATCTAACTAATCTTTATTGGTTGGATTTAGCCGATAATGAGCTTAGCGGACCAATATCAGTTTCTAATGGAAGCAGGCCTGGACTCGATATGCTGGTTAAAACAAAGCACTTTCATTTTGGAAAGAATCGGCTTTCTGGTGAGATCCCAAGTCAGCTCTTCAGCTCGTCTATGAAGTTAATACATTTGCTTTTAGAAAACAACCAGCTCACCGGCAGCATCCCTTCCACACTAGGACTTGTGCAGACCTTGGAGGTCGTTCGTCTCGATAGGAATTCGTTAACTGGACCTGTTCCATCAAACATCAACAACCTTAGCAGTGTCAGTGATCTGTTCCTGTCCAATAATAGACTGACTGGCGCGTTACCCAATCTTACGGGTATGGACTTCCTCCACTATGCTGTATTGAGAAATAACCAGCTTAATGGCACCTTGGATATTGGTTCCAGCTATAGCAGCCAACTTCAAGAGGTTGACTTGCAGAATAATTTCATCAGTAGCTTCACACAAAGGGCGGGATACAATATTGGGTTAAATCACGAGTGGCTGGCAAGCTCAAGAACTGCCGTTGCCCGCCCAACGCCGGAGCTACGACGACTTCGTCGGAGCTCAAGCGACCACCCAATCCACCCCGAATTCCAAATCATCACTCTCTTTGGCAACCTCAGTGTTTGTGTCTCTCGGTCCTATCGACTCCCAGTGGATTCGGTCTCTCTGAAAAATCCGACGACAGATCTTGACGATTACCTTGTGATAAGCCTTGAAATTTTTCCATTCGGCCAAGGTTATTTCAATCGAACAGGAGTTAGTGCAATTGGATTTGTGCTTAGCAACCAAACTTTTAAGCCTCCCCCAGATTTTGGACCTTTCTTTTTCATTGGCGACGGCTATCAGTACTTTTCAGGTCCTAGAACAGCACACAAGTCATCATCAAATACCAGCATTATCATCGGAGCAGCAACTAGTGGTGCTGGCCTTTTGCTATTACTACTACTTGCAGGATTTTATGCTTATCGTCAAAAGAGAAGGGCTGAAAGAGCTGATCATCAGAACAATCCCTTCGCATTGTGGGACCCAACTAAAAACAGTGGCGGTGTTCCTCAGTTGAAAGGAGCAAGGTCTTTCTCATTTGAAGAGCTTAATAAATACACAAATAATTTTTCAGAAACCAACAATATTGGATCCGGCGGCTACGGAATGGTATATAGAGGAAATCTTCCCAATGGGCAACTGATTGCCATTAAAAGAGCCGTACAAGGGTCTACGCAGGGTGGCCTCGAGTTTAAAACTGAGATTGAGCTCCTTTCGCGGGTTCATCACAAAAATGTTGTCAGCCTTGTGGGTTTCTGTTTCGCGCATGGTGAACAAATGCTGATATACGAGTATATTCCAAATGGTACACTCAAGGACAGTCTTTTAGGGAAGACTGGAATCAAGTTGGACTGGGCGAGAAGACTTAGAATAGCCCTTGGAGCAGCAAGAGGTTTGCAATATTTGCATGACCTTGCCAACCCTCCCATCATACACCGGGACATCAAATCGAACAATATCTTACTAGACGAACGCTTGAATGCGAAAGTTGCTGACTTCGGTCTCTCTAAGCCAATGGGCGACCCTGAGAAGGGTCATGTTACCACTCAAGTCAAAGGGACAATGGTTAGTAAAGATCCCTCCAATCCTTATTTTAGTAAATATTGTGTTTTTTATTACTCGTTTGGCTCATGTTTTAGTGATTTTCTTGAAGAAGAAATTGCGAGACCTCCAATACATCAAGGGAAGTATATTGTAAAAGAGGTGAGGCAATCAATGGACAGAACAAAAGATCTATACAACCTTCAAGGAGTTCTCGACCCCACCATTGGCCAGTTCACTGATCTTAGGGGCTTAGAGAAATTCATTGACATTTCAATGAGGTGTGTTGAAGAGGCCGGGGCTGACAGACCCTCGATGAGCGAGGTGGTGAAAGAGATAGAGAACGCAATGGAAATGGCGGGCTTGAATCCGAATGTTGAATCGGCTTCGACTTCAGCAAGTTATGAAGGGGTAAGTAAGGGATATGACCATCCTTACAGTAATGAAAGCCTTTTTGTTTATAGTGGTGCTTATATCCCTTCAAAGTTGGAGCCCAAGTGA

Network for GWHGAAZE029495

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	547	698	7.40E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.140
	SRR3591706	second leaf	4.836
	SRR3591707	mature leaf	9.992
	SRR3591708	Shoot apex	7.225
	SRR3591709	Stem	8.686
	SRR3591710	White floral bud	5.464
	SRR3591711	White flower	7.004
	SRR3591712	Green floral bud	2.948
	SRR3591713	Yellow flower	7.197
SRP173429	SRR8316895	Juvenile bud stage	2.709
	SRR8316896	Juvenile bud stage	3.391
	SRR8316897	Juvenile bud stage	1.990
	SRR8316894	Third green stage	1.113
	SRR8316900	Third green stage	2.777
	SRR8316901	Third green stage	2.419
	SRR8316898	Complete white stage	0.707
	SRR8316899	Complete white stage	4.891
	SRR8316903	Complete white stage	1.652
	SRR8316902	Silver flowering stage	1.497
	SRR8316904	Silver flowering stage	2.319
	SRR8316905	Silver flowering stage	0.986
	SRR8316906	Gold flowering stage	2.341
	SRR8316907	Gold flowering stage	2.413
	SRR8316908	Gold flowering stage	3.150
SRP132670	SRR6706286	Control	4.037
	SRR6706287	Light intensity 50%	3.405
	SRR6706288	Light intensity 20%	3.274
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.340
	CNS0095593	Slightly white alabastrum(diploid) 2	2.082
	CNS0095594	Slightly white alabastrum(diploid) 3	2.293
	CNS0095595	Whole white alabastrum(diploid) 2	2.386
	CNS0095596	Whole white alabastrum(diploid) 3	1.362
	CNS0095597	Whole white alabastrum(diploid) 4	1.713
	CNS0095598	Silvery flower (diploied) 1	2.973
	CNS0095599	Silvery flower (diploied) 2	2.472
	CNS0095600	Silvery flower (diploied) 3	1.563
	CNS0095601	Golden flower (diploid) 1	3.857
	CNS0095602	Golden flower (diploid) 2	2.982
	CNS0095603	Golden flower (diploid) 3	2.734
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.571
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.157
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.488
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.148
	CNS0095610	Silvery flower (tetraploid) 1	0.614
	CNS0095611	Silvery flower (tetraploid) 2	0.830
	CNS0095612	Silvery flower (tetraploid) 3	0.783
	CNS0095613	Golden flower (tetraploid) 1	0.429
	CNS0095614	Golden flower (tetraploid) 2	0.553
	CNS0095615	Golden flower (tetraploid) 3	0.332
CRA001975	CRR073297	Stem 1	2.967
	CRR073298	Stem 2	2.803
	CRR073299	Stem 3	2.468
	CRR073300	Leaf 1	2.645
	CRR073301	Leaf 2	2.976
	CRR073302	Leaf 3	1.373
	CRR073303	Juvenile bud 1	1.613
	CRR073304	Juvenile bud 2	0.951
	CRR073305	Juvenile bud 3	2.379
	CRR073306	Third green 1	1.745
	CRR073307	Third green 2	1.069
	CRR073308	Third green 3	1.449
	CRR073309	Second white 1	0.527
	CRR073310	Second white 2	0.642
	CRR073311	Second white 3	0.445
	CRR073312	Silver flowering 1	0.318
	CRR073313	Silver flowering 2	0.260
	CRR073314	Silver flowering 3	0.183
	CRR073315	Gold flowering 1	5.524
	CRR073316	Gold flowering 2	13.853
	CRR073317	Gold flowering 3	6.279
	CRR073318	Tawny withering 1	13.674
	CRR073319	Tawny withering 2	13.430
	CRR073320	Tawny withering 3	10.673