Gene detail

Detail information of GWHGAAZE029494

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU33236.1	0	hypothetical protein MIMGU_mgv1a021943mg [Erythranthe guttata]
COG	YP_004775215.1	2E-35	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LT96\|Y5977_ARATH	2E-150	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|A0A022QZ72\|A0A022QZ72_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU33236.1}
TAIR10	AT1G79620.1	2E-136	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	24164659	24174651	+
GWHAAZE00000009	mRNA	24164659	24174651	+
GWHAAZE00000009	exon	24164659	24164777	+
GWHAAZE00000009	exon	24165156	24165227	+
GWHAAZE00000009	exon	24165571	24165645	+
GWHAAZE00000009	exon	24165724	24165795	+
GWHAAZE00000009	exon	24167448	24167609	+
GWHAAZE00000009	exon	24167705	24167779	+
GWHAAZE00000009	exon	24168843	24168914	+
GWHAAZE00000009	exon	24169015	24169086	+
GWHAAZE00000009	exon	24169178	24169246	+
GWHAAZE00000009	exon	24169333	24169377	+
GWHAAZE00000009	exon	24169469	24169575	+
GWHAAZE00000009	exon	24170284	24170431	+
GWHAAZE00000009	exon	24170688	24171172	+
GWHAAZE00000009	exon	24171518	24171676	+
GWHAAZE00000009	exon	24171760	24171900	+
GWHAAZE00000009	exon	24173176	24173459	+
GWHAAZE00000009	exon	24174178	24174651	+
GWHAAZE00000009	CDS	24164659	24164777	+
GWHAAZE00000009	CDS	24165156	24165227	+
GWHAAZE00000009	CDS	24165571	24165645	+
GWHAAZE00000009	CDS	24165724	24165795	+
GWHAAZE00000009	CDS	24167448	24167609	+
GWHAAZE00000009	CDS	24167705	24167779	+
GWHAAZE00000009	CDS	24168843	24168914	+
GWHAAZE00000009	CDS	24169015	24169086	+
GWHAAZE00000009	CDS	24169178	24169246	+
GWHAAZE00000009	CDS	24169333	24169377	+
GWHAAZE00000009	CDS	24169469	24169575	+
GWHAAZE00000009	CDS	24170284	24170431	+
GWHAAZE00000009	CDS	24170688	24171172	+
GWHAAZE00000009	CDS	24171518	24171676	+
GWHAAZE00000009	CDS	24171760	24171900	+
GWHAAZE00000009	CDS	24173176	24173459	+
GWHAAZE00000009	CDS	24174178	24174651	+

Transcript Sequence
>GWHTAAZE029528 ACTTATCTATTGGCTCTAAAGGATATATGGAAGAACACACCGCCCAGTTGGGTCGGCACGGATCCATGTGGAGATCGCTGGGAAGGAATTGGTTGCACCAATTCACGTGTTACTTCAATAACATTATCAAGCATGAGTTTGACTGGTACACTATCTGGAGACATCGACAATTTATCCGAATTGCAGACTCTGGATCTGTCATACAATACAGGTTTGACTGGATCTATTCCTCCATCAATTGGAAATTTGAGGAAGTTATCAAACTTAATCCTGATTGGTTGCGGTTTCACCGGTCCAATTCCAGACTCAATAGGATCTCTTAAGCAGCTGGTCTATTTGTCTCTAAATACTAATGGCTTCAGTGGACCAATACCGCCTTCAATTGGTAACCTAAATAATCTTTATTGGTTGGATTTGGCCGATAATAAGCTTAGTGGACCAATACCAGTTTCTAATGGAAGCAGGCCTGGACTCGATATGCTGGTTAAAACAAAGCACTTTCATTTTGGAAAGAATCGGCTCTCTGGTGAGATCCCAAGTCAGCTCTTCAGCTCGTCTATGAAGTTAATACATCTGCTTTTAGAAAACAACCAGCTCACCGGCAGCATCCCTTCCACACTAGGACTTGTGCAGGCCTTGGAGGTCGTTCGTCTCGATAGGAATTTGTTAACTGGACCTGTTCCATCAAACATCAACAACCTTAGCAGTGTCAGTGATCTGTTCCTGTCCAATAATAGACTGACTGGCGCGTTACCCAATCTTACGGGCATGAACTTCCTCCACTATGTGGATCTGAGCAACAATACTTTCGAGGTTTCTGATGTTCCTTCGTGGAACTCTGATAATCCAATAAACCTTGTATTGACAGAATGTTGCAAAACACAAGACTTAAAGGATCAGTACCAGTTGCACTCTTTACCGCTCCTCAATTACAGACTGTTCACGGGTGGCTGGCAAGCTCAAGAACCACTGTTGCCCGCCCACCGCCGGAGCTACGACGACTTCGTCGGAGCTCAAGCAACCACCCAACCCACCCCAAATTCCAAATCATCACTCTCTTTGGCGACCTCAGTATTTGTGTCTCTCGGACTTTATGGTAACCCTGTTTGTGCAGAAGAAGGAGCAATAGATAAAAAATACTGTAACGTTACTCAACGGCCTAATGGCTCGTATTCAACATTACCAAGAAATTGTTTGCCTAGTACCTGCAGCTCAAAGCAAATTTCGAGCCCGAACTGTCAATGTGCATATCCGTACACAGGGAAAATATCATTTAGAGCTCGTAAGTTTTCCAGCCTGGGAAATTCGAGTATTTACATTTCTCTTGAAGAACGTATGATGGTTTCTTTTCAGTCCTATCGACTCCCAGTGGATTCGGTCTCTCTGAAAAATCCGACGACAGATCTTGATGATTACCTTGTAATAAGCCTTGAAATTTTTCCATTCGGCCAAGATTATTTCAATCGAACAGGAGTTAGTGCGCTTGGATTTGTGCTTAGCAACCAAACTTTTAAGCCTCCCCCAGATTTTGGACCTTTTTTTTTCATCGGCGATGGCTATCAGTACTTTTCAGATCCTAGAACAGCACACAAGTCATCATCAAATACCGGAATTATCATCGGAGCAGCAACTGGTGGTGCTGGCCTTTTGCTATTACTACTACTTGCAGGATTTTATGCTTATTGTCAAAAGAGGAGGGCTGAAAGAGCTGATCATCAGAACAATCCCTTCGCATTGTGGGACCCAACTAAAAACAGTGGCGGTGTTCCTCAGTTGAAAGGAGCAAGGTCTTTCTCATTTGAAGAGCTCAATAAATACACAAATAATTTTTCAGAAACCAACAATATTGGATCCGGCGGCTACGGAATGGTAAGGCCGAGGTTTTCAAAACATTGTAATAAACAGCCTATTATTTTTGCAGGGAAGACTGGAATCAGGTTGGACTGGGCGAGAAGACTTAGAATAGCCCTTGGAGCAGCAAGAGGTTTGCAATATTTGCATGACCTTGCCAACCCTCCTATCATCCACCGGGACATCAAATCAAACAATATCTTACTGGACGAACGCTTGAATGCAAAAGTTGCTGACCTCGGTCTCTCTAAGCTAATGGGCGACCCTGAGAAGGGTCATGTTACCACTCAAGTCAAAGGGACAATGGGCTACATGGACCCCGAATATTACATGACCCAACAATTAACTGAAAAGAGTGACGTTTACAGTTTCGGAGTTTTACTATTGGAGTTAATAACAGCGAGACCTCCTATACATCAAGGGAAGTATATTGTAAAAGAGGTGAGGCAATCAATGGACAGAACAAAGGATCTGTACAACCTTCAAGGAGTTCTCGACCCCTCCATTGGCCAGTTCACTGATCTTAGGGGCTTAGAGAAATTCATTGACATTTCAATGAGGTGTGTTGTAGAGGCCGGGGCCGACAGACCTGCGATGAGCGAGGTGGTGAAAGAGATAGAAAACGCCATGGAAATGGCGGGCTTGAATCCGAATGTTGAATCGGCTTCGACTTCAGCAAGTTATGAAGGGGTAAGTAAGGGATATGAGCATCCTTATAGTAATGAAAGCCTTTTTGTTTATAGTGGTGCTTATATCCCATCAAAGTTGGAGCCCAAGTGA

Network for GWHGAAZE029494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	655	821	2.50E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.750
	SRR3591706	second leaf	25.192
	SRR3591707	mature leaf	13.202
	SRR3591708	Shoot apex	21.901
	SRR3591709	Stem	2.579
	SRR3591710	White floral bud	12.797
	SRR3591711	White flower	5.385
	SRR3591712	Green floral bud	10.197
	SRR3591713	Yellow flower	1.958
SRP173429	SRR8316895	Juvenile bud stage	16.360
	SRR8316896	Juvenile bud stage	21.740
	SRR8316897	Juvenile bud stage	7.209
	SRR8316894	Third green stage	10.482
	SRR8316900	Third green stage	22.476
	SRR8316901	Third green stage	20.432
	SRR8316898	Complete white stage	7.334
	SRR8316899	Complete white stage	21.173
	SRR8316903	Complete white stage	10.231
	SRR8316902	Silver flowering stage	4.633
	SRR8316904	Silver flowering stage	7.153
	SRR8316905	Silver flowering stage	4.089
	SRR8316906	Gold flowering stage	10.083
	SRR8316907	Gold flowering stage	8.547
	SRR8316908	Gold flowering stage	4.746
SRP132670	SRR6706286	Control	21.107
	SRR6706287	Light intensity 50%	23.982
	SRR6706288	Light intensity 20%	25.450
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.897
	CNS0095593	Slightly white alabastrum(diploid) 2	8.508
	CNS0095594	Slightly white alabastrum(diploid) 3	10.232
	CNS0095595	Whole white alabastrum(diploid) 2	7.547
	CNS0095596	Whole white alabastrum(diploid) 3	5.571
	CNS0095597	Whole white alabastrum(diploid) 4	8.933
	CNS0095598	Silvery flower (diploied) 1	10.479
	CNS0095599	Silvery flower (diploied) 2	8.035
	CNS0095600	Silvery flower (diploied) 3	7.507
	CNS0095601	Golden flower (diploid) 1	7.341
	CNS0095602	Golden flower (diploid) 2	8.046
	CNS0095603	Golden flower (diploid) 3	6.921
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.669
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.290
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.852
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.613
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.751
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.422
	CNS0095610	Silvery flower (tetraploid) 1	2.635
	CNS0095611	Silvery flower (tetraploid) 2	2.419
	CNS0095612	Silvery flower (tetraploid) 3	1.826
	CNS0095613	Golden flower (tetraploid) 1	1.383
	CNS0095614	Golden flower (tetraploid) 2	1.620
	CNS0095615	Golden flower (tetraploid) 3	0.552
CRA001975	CRR073297	Stem 1	22.990
	CRR073298	Stem 2	16.106
	CRR073299	Stem 3	11.628
	CRR073300	Leaf 1	21.167
	CRR073301	Leaf 2	19.909
	CRR073302	Leaf 3	15.327
	CRR073303	Juvenile bud 1	12.859
	CRR073304	Juvenile bud 2	17.447
	CRR073305	Juvenile bud 3	14.448
	CRR073306	Third green 1	6.737
	CRR073307	Third green 2	3.140
	CRR073308	Third green 3	5.821
	CRR073309	Second white 1	3.658
	CRR073310	Second white 2	3.413
	CRR073311	Second white 3	2.583
	CRR073312	Silver flowering 1	1.371
	CRR073313	Silver flowering 2	1.479
	CRR073314	Silver flowering 3	0.988
	CRR073315	Gold flowering 1	9.321
	CRR073316	Gold flowering 2	15.971
	CRR073317	Gold flowering 3	8.589
	CRR073318	Tawny withering 1	9.390
	CRR073319	Tawny withering 2	9.156
	CRR073320	Tawny withering 3	8.562