Gene detail

Detail information of GWHGAAZE026487

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275275.1	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Vitis vinifera]
COG	YP_004775215.1	1E-48	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|F6HC72\|F6HC72_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49784.1}
TAIR10	AT3G56370.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5410616	5413881	+
GWHAAZE00000008	mRNA	5410616	5413881	+
GWHAAZE00000008	exon	5410616	5411255	+
GWHAAZE00000008	exon	5411344	5412079	+
GWHAAZE00000008	exon	5412435	5413881	+
GWHAAZE00000008	CDS	5410616	5411255	+
GWHAAZE00000008	CDS	5411344	5412079	+
GWHAAZE00000008	CDS	5412435	5413881	+

Transcript Sequence
>GWHTAAZE026521 ATGAAAAGGCTGTTGTTTGTTGTTGTATTCGTATTGTTCCTCTTAGCTCCTGTTTATGTGAGGTCTTTGAGTCCATCTCTGAATGATGATGTTCTTGGGCTGATAGTATTCAAATCTGACATCCAAGATCCAGATAGGAATTTGGTATCTTGGAATGAAGATGATAATAGTCCCTGTAACTGGGTGGGGATCAAATGCAACCCTAGATCCAACAGAGTATCAGACCTCGTCCTTGAGAACCTCGGTCTTTCAGGACGGATAGGCCGAGGTCTCCTCCAACTGCAATCTCTCCAAAAGTTATCTCTCGCAAAGAACAATCTTACAGGAAGCATAGGCCTCAGTTTTTCCCAACTCGAAAACCTGCGGGTCTTAGACTTGAGTGAGAATAGTCTATCAGGACCAATCCCGGGCAATCTCTTTCAGCAATGTGGGTCTTTAAGATCAATTTCTTTGGCCAGTAACAAGTTTACAGGTCAAATTCCAGACAGTTTGGGTTCATGTTCAACTCTTGCTGTGCTTAATCTTTCCTCTAATCAGTTTTCGGGTCCACTATCTTCTGGGGTCTGGTCTTTGCATAGTCTTCGATCACTTGATCTGTCCAATAATTGGATAGAAGGTGAGATTCCAAAAGGCATTGAAGGTCAATTGATCTCAGCGAGAATTCTCTTCGGGGATATACCAAGCTCAATGCAGACCCTAAGCATGTGTAGCGATCTAAACTTGCGTAAAAATTCATTTACTGGTAACTTGCCCGAATGGATTGGAGATATGAGAAGCCTTGAGAGTCTTGATCTTTCCGAAAATAGCTTTGGTGGCCAGGTTCCAACATCAATTGGGAAGCTACAGTCTTTGAAGGTACTAAATATCTCAATGAATGCCTTCTCAGGGAACTTGCCAGAATCGATGATCAACTGTGAAAACCTTCTTGCCATTGATATTACTCGGAATTCTTTGACGGGTAATCTTCCTTCTTGGTTATTTAAACTGGGGTTACAGCGAGTTCTTTTTTCGGGTAATAGATTAAGTGGGAGTCTGGATAGCGCTTTTACTTCATCAATTCTAAACTCACTCCAAAAGCTTCAGGTTTTGGATATATCCCATAACACATTATCAGGTCAAATCCCAGATGCTCTTGGGGATTTTAGCAGCCTGCAGTTCTTGAATTTGTCTAAGAACTCGCTGATGGGCGGAATTCCAGTGACTATAGGAGATTTGAAGGCTTTGGATATTCTTGATTTAAGTGAGAACCAGTTGAATGGAAGCATTCCTCTGGAAATTGGAGGGGCTAAATTGGTGAAGGAACTGAGACTTAAGAAGAATGCATTTGCAGGGGGGATTCCATCTTCAATTGAGCACTGTTCGTCACTAACAGATTTGATTTTGTCAGAGAACTACCTAACCGGCCCAATACCAGCAGCCGTTGCAAAACTTACTCACCTTCAAAATGTTGATTTGTCATTTAACAAACTCTCTGGAACCCTACCGAAGCAATTGGAAAATCTTGTCCGCCTTGTCTCTTTCAACATTTCACACAACCAGCTCCAAGGTGAACTACCCACTGGCAATTTTTTCAACACCATATCCCCTTCCTTCCTCTACGGTAATCCATCTCTTTGTGGTGCTGTAGTCAATAGAAGTTGCCCTGGTGTACTTCCCAAGCCAATAGTCCTTAACCCTAACTCCACTGATTCCACCCCTAATTCACTACCCCAAAATTTCGGTCACAAGAGAATCATCCTTAGCATTTCAGCCCTCATTGCCATTGGTGCAGCTGCCGTGATTATCATTGGTGTAATTGCCATCACTGTCCTCAATTTCCATGTCCGTTCTTCCACATCTCCTTCGGCTGCAGCTCTTACACTATCGGGTGGAGATGACTTCAGCAATTCTTCGACCACTGATGCCAACTCCGGCAAGCTGGTCATGTTTTCAGGGGAACCCGACTTCAGCACCGGAGCACATGCTCTTCTAAACAAAGATTGCGAGCTCGGACGTGGTGGGTTCGGTGCGGTTTATCGAACAGTTCTTCGTGATGGGCGTCCTGTTGCCATCAAGAAGCTCACCGTATCCAGTCTGGTCAAATCCCAAGAAGATTTCGAACGGGAAGTCAAGAAATTGGGGAAAATCCGCCACCAAAATCTTGTTTCTCTCCAAGGGTATTACTGGACCCCATCGCTACAGCTCCTCATATATGAATTTGTCTCCGGTGGGAACTTGTACAAGCATCTTCATGAAGGGTCAATTGGAAACTTCCTCTCATGGAATGAGAGATTCAATGTTATCATTGGTATAGCTAGAAGCTTGGCTCTATTGCACCAAATGGATATAATTCACTATAATCTAAAATCAAGCAATATCCTACTTGACAGCTCGGGTGAGCCTAAAGTTGCAGATTTTGGCCTAGCTAGGCTTTTGCCAATGCTAGACCGTTATGTTCTAAGTAGCAAGATTCAAAGTGCGCTTGGCTACATGGCTCCGGAGTTTGCGTGTAGGACGGTGAAGATAACAGAGAAATGTGATGTTTACGGGTTTGGGGTTTTGGTATTGGAGGTGGTAACGGGGAGGCGGCCGGTTGAGTACATGGAGGATGATGTGGTGGTGCTTTGTGACATGGTGAGAGGAGCGCTTGAGGAAGGGCGGGTGGAGGAGTGTGTGGACGAGCGGCTGCAGGGGATGTTTCCGGCGGAGGAGGCGGTTCCAGTGATGAAATTAGGGTTAATATGCACGTCACAAGTGCCTTCAAACCGGCCGGACATGGGAGAGGTGATTAACATATTGGAGCTAATCCGGTGCCCTTCAGAAGGGCAGGAGGAGTTGGAATGA

Network for GWHGAAZE026487

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	67	1.00E-10
PF13855.7	LRR_8	96	156	2.10E-10
PF13516.7	LRR_6	191	207	0.37
PF13855.7	LRR_8	353	394	7.40E-07
PF13855.7	LRR_8	455	514	2.70E-07
PF07714.18	PK_Tyr_Ser-Thr	659	925	4.70E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.190
	SRR3591706	second leaf	10.899
	SRR3591707	mature leaf	5.404
	SRR3591708	Shoot apex	35.125
	SRR3591709	Stem	12.469
	SRR3591710	White floral bud	5.705
	SRR3591711	White flower	4.755
	SRR3591712	Green floral bud	8.636
	SRR3591713	Yellow flower	0.352
SRP173429	SRR8316895	Juvenile bud stage	10.723
	SRR8316896	Juvenile bud stage	9.889
	SRR8316897	Juvenile bud stage	4.576
	SRR8316894	Third green stage	5.028
	SRR8316900	Third green stage	10.756
	SRR8316901	Third green stage	10.046
	SRR8316898	Complete white stage	0.739
	SRR8316899	Complete white stage	8.549
	SRR8316903	Complete white stage	2.754
	SRR8316902	Silver flowering stage	0.350
	SRR8316904	Silver flowering stage	0.587
	SRR8316905	Silver flowering stage	0.111
	SRR8316906	Gold flowering stage	0.212
	SRR8316907	Gold flowering stage	0.439
	SRR8316908	Gold flowering stage	0.713
SRP132670	SRR6706286	Control	7.020
	SRR6706287	Light intensity 50%	7.862
	SRR6706288	Light intensity 20%	8.220
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.745
	CNS0095593	Slightly white alabastrum(diploid) 2	7.157
	CNS0095594	Slightly white alabastrum(diploid) 3	4.950
	CNS0095595	Whole white alabastrum(diploid) 2	4.632
	CNS0095596	Whole white alabastrum(diploid) 3	3.617
	CNS0095597	Whole white alabastrum(diploid) 4	3.790
	CNS0095598	Silvery flower (diploied) 1	8.308
	CNS0095599	Silvery flower (diploied) 2	7.215
	CNS0095600	Silvery flower (diploied) 3	4.558
	CNS0095601	Golden flower (diploid) 1	6.403
	CNS0095602	Golden flower (diploid) 2	6.311
	CNS0095603	Golden flower (diploid) 3	5.348
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.959
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.155
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.665
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.728
	CNS0095610	Silvery flower (tetraploid) 1	2.044
	CNS0095611	Silvery flower (tetraploid) 2	3.496
	CNS0095612	Silvery flower (tetraploid) 3	0.597
	CNS0095613	Golden flower (tetraploid) 1	0.588
	CNS0095614	Golden flower (tetraploid) 2	1.404
	CNS0095615	Golden flower (tetraploid) 3	0.340
CRA001975	CRR073297	Stem 1	12.131
	CRR073298	Stem 2	10.066
	CRR073299	Stem 3	11.481
	CRR073300	Leaf 1	6.589
	CRR073301	Leaf 2	8.094
	CRR073302	Leaf 3	7.254
	CRR073303	Juvenile bud 1	4.493
	CRR073304	Juvenile bud 2	3.257
	CRR073305	Juvenile bud 3	8.442
	CRR073306	Third green 1	0.657
	CRR073307	Third green 2	0.420
	CRR073308	Third green 3	0.848
	CRR073309	Second white 1	0.067
	CRR073310	Second white 2	0.111
	CRR073311	Second white 3	0.004
	CRR073312	Silver flowering 1	0.021
	CRR073313	Silver flowering 2	0.009
	CRR073314	Silver flowering 3	0.118
	CRR073315	Gold flowering 1	1.184
	CRR073316	Gold flowering 2	1.131
	CRR073317	Gold flowering 3	2.262
	CRR073318	Tawny withering 1	6.696
	CRR073319	Tawny withering 2	3.578
	CRR073320	Tawny withering 3	8.479