Gene detail

Detail information of GWHGAAZE023109

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657252.1	0	PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Vitis vinifera]
COG	YP_022913.1	8E-10	serine/threonine protein kinase
Swissprot	tr\|Q9LYU7\|CRN_ARATH	1E-157	Inactive leucine-rich repeat receptor-like protein kinase CORYNE (Precursor)
trEMBL	tr\|F6HJ63\|F6HJ63_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52260.1}
TAIR10	AT5G13290.2	1E-115	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	83715379	83717301	-
GWHAAZE00000006	mRNA	83715379	83717301	-
GWHAAZE00000006	exon	83715379	83715688	-
GWHAAZE00000006	exon	83715878	83715988	-
GWHAAZE00000006	exon	83716586	83717301	-
GWHAAZE00000006	CDS	83716586	83717301	-
GWHAAZE00000006	CDS	83715878	83715988	-
GWHAAZE00000006	CDS	83715379	83715688	-

Transcript Sequence
>GWHTAAZE023139 ATGCTCAGCATTTTGTTTGGAGTTACTGCTGGATTGATTCTTGCTCTTCTTTTTGGTTGCCTCGTTCGATGCTTCCTTCACTTCATCAACAGGACCCCAATTCTCAAAGGCCCAGTTGTCTTTTCCCCAAAAATCGCTCCAAAAACTCTACAAGCAGCTCTTACCAATGAAAACCAGTTGCTAGGATCAAGCCCTACTGGCAGCTACTACAGAACTGTTCTTGATAATGGGTTAATCATTGCGGTTAAGAGGCTGGAGCCCTTTGAGAACGGTTCTCCTGAGAACGAGGCTCAGCGCAAGTCCTCCCTCAAGAGACTGATACACCAGGATCTAGAAATACTTGCTAGTTTAAGGCATCGGAATTTAATGAGCTTGCGAGCTTATGTTCGCGAATCTGATCGCTTCTCTTTGGTTTATGATTATGTGCCTACTGGTAGTCTTCAAGACACGATGAACAGAGTGAGGGAAAACCAACTACAACTTAGCTGGGATATGCGGCTCCGGATTGCTGTTGGAATTGTTAAGGGGCTTCAGTATCTTCACTTTACCTGTGTCCCAAGGATCTTGCACTACAACTTGAAGCCTTCCAATGTGATGTTGGACGCGGAGTTTGAACCAAGGCTGGCAGATTGTGGGTTGGCTAAGCTGATTCCCAATTTCGATAGAGGGGCAGCAGCAGCAGGGTATAATGCACCTGAATGTTTCCAGAATTGCAGCTCGAATTCTTGCAATTGTATCAATAATGCCTGGGACCTTCGATGGGAGATTCGTTCTCCAGTTAAGCCTGCCTGCCAACGAGCCATTAATGTTTATGTCAAAATTGTTGGGTATACAGATAAGAGTGATGTGTTCGGCTTCGGGGTCATATTGGGTGTTCTGTTAACTGGTAGAGACCCAATGGATCCTTTCTTTGGGGAAGGAGCCAGTGGGGGAAGCCTGGGAGGGTGGCTTCAACATCTTCAAGAAGCTGGGGAGGCTCGAGAAGCACTAGATAAAAGTATACTTGGGGAAGAATTGGAGGAAGATGAGATGCTGATGGCAGTGAGGATTGCGGTCGTATGCCTATCTGATTTACCAGCAGACCGCCCGTCGAGTGACGAGCTTGTTTCTATGCTCACCCAGCTGCACAGTTTTTGA

Network for GWHGAAZE023109

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	57	237	1.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.651
	SRR3591706	second leaf	7.280
	SRR3591707	mature leaf	5.993
	SRR3591708	Shoot apex	12.503
	SRR3591709	Stem	10.783
	SRR3591710	White floral bud	7.044
	SRR3591711	White flower	5.890
	SRR3591712	Green floral bud	9.698
	SRR3591713	Yellow flower	3.544
SRP173429	SRR8316895	Juvenile bud stage	3.351
	SRR8316896	Juvenile bud stage	6.344
	SRR8316897	Juvenile bud stage	2.846
	SRR8316894	Third green stage	3.809
	SRR8316900	Third green stage	7.280
	SRR8316901	Third green stage	7.247
	SRR8316898	Complete white stage	1.236
	SRR8316899	Complete white stage	5.248
	SRR8316903	Complete white stage	3.211
	SRR8316902	Silver flowering stage	1.046
	SRR8316904	Silver flowering stage	1.156
	SRR8316905	Silver flowering stage	0.541
	SRR8316906	Gold flowering stage	1.024
	SRR8316907	Gold flowering stage	1.715
	SRR8316908	Gold flowering stage	1.919
SRP132670	SRR6706286	Control	6.456
	SRR6706287	Light intensity 50%	6.195
	SRR6706288	Light intensity 20%	6.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.441
	CNS0095593	Slightly white alabastrum(diploid) 2	8.879
	CNS0095594	Slightly white alabastrum(diploid) 3	15.021
	CNS0095595	Whole white alabastrum(diploid) 2	11.826
	CNS0095596	Whole white alabastrum(diploid) 3	11.732
	CNS0095597	Whole white alabastrum(diploid) 4	13.168
	CNS0095598	Silvery flower (diploied) 1	4.536
	CNS0095599	Silvery flower (diploied) 2	1.438
	CNS0095600	Silvery flower (diploied) 3	2.220
	CNS0095601	Golden flower (diploid) 1	2.613
	CNS0095602	Golden flower (diploid) 2	2.672
	CNS0095603	Golden flower (diploid) 3	2.564
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.366
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.129
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.423
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.944
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.158
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.685
	CNS0095610	Silvery flower (tetraploid) 1	1.606
	CNS0095611	Silvery flower (tetraploid) 2	2.748
	CNS0095612	Silvery flower (tetraploid) 3	1.461
	CNS0095613	Golden flower (tetraploid) 1	1.682
	CNS0095614	Golden flower (tetraploid) 2	1.834
	CNS0095615	Golden flower (tetraploid) 3	1.263
CRA001975	CRR073297	Stem 1	11.562
	CRR073298	Stem 2	10.832
	CRR073299	Stem 3	11.541
	CRR073300	Leaf 1	12.121
	CRR073301	Leaf 2	10.570
	CRR073302	Leaf 3	7.524
	CRR073303	Juvenile bud 1	11.533
	CRR073304	Juvenile bud 2	8.360
	CRR073305	Juvenile bud 3	13.451
	CRR073306	Third green 1	1.256
	CRR073307	Third green 2	2.486
	CRR073308	Third green 3	2.244
	CRR073309	Second white 1	0.990
	CRR073310	Second white 2	0.413
	CRR073311	Second white 3	0.588
	CRR073312	Silver flowering 1	1.404
	CRR073313	Silver flowering 2	1.100
	CRR073314	Silver flowering 3	0.303
	CRR073315	Gold flowering 1	2.537
	CRR073316	Gold flowering 2	4.152
	CRR073317	Gold flowering 3	5.339
	CRR073318	Tawny withering 1	12.549
	CRR073319	Tawny withering 2	8.589
	CRR073320	Tawny withering 3	14.846