Gene detail

Detail information of GWHGAAZE023006

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13280.1	0	unnamed protein product [Coffea canephora]
COG	YP_825561.1	2E-24	serine/threonine protein kinase
Swissprot	tr\|C0LGI2\|Y1677_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g67720 (Precursor)
trEMBL	tr\|A0A068UXN3\|A0A068UXN3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13280.1}
TAIR10	AT1G67720.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81940991	81946414	+
GWHAAZE00000006	mRNA	81940991	81946414	+
GWHAAZE00000006	exon	81940991	81941512	+
GWHAAZE00000006	exon	81941958	81942501	+
GWHAAZE00000006	exon	81942618	81942750	+
GWHAAZE00000006	exon	81943073	81943144	+
GWHAAZE00000006	exon	81943232	81943300	+
GWHAAZE00000006	exon	81943396	81943467	+
GWHAAZE00000006	exon	81943692	81943760	+
GWHAAZE00000006	exon	81944290	81944459	+
GWHAAZE00000006	exon	81944542	81944795	+
GWHAAZE00000006	exon	81945166	81945292	+
GWHAAZE00000006	exon	81945401	81945466	+
GWHAAZE00000006	exon	81945548	81945734	+
GWHAAZE00000006	exon	81945828	81945960	+
GWHAAZE00000006	exon	81946100	81946414	+
GWHAAZE00000006	CDS	81940991	81941512	+
GWHAAZE00000006	CDS	81941958	81942501	+
GWHAAZE00000006	CDS	81942618	81942750	+
GWHAAZE00000006	CDS	81943073	81943144	+
GWHAAZE00000006	CDS	81943232	81943300	+
GWHAAZE00000006	CDS	81943396	81943467	+
GWHAAZE00000006	CDS	81943692	81943760	+
GWHAAZE00000006	CDS	81944290	81944459	+
GWHAAZE00000006	CDS	81944542	81944795	+
GWHAAZE00000006	CDS	81945166	81945292	+
GWHAAZE00000006	CDS	81945401	81945466	+
GWHAAZE00000006	CDS	81945548	81945734	+
GWHAAZE00000006	CDS	81945828	81945960	+
GWHAAZE00000006	CDS	81946100	81946414	+

Transcript Sequence
>GWHTAAZE023036 TTCATTAGTATAGACTGTGGAGGGAAAAGTAATTACACTGACCCGAAAACCGGCTTGGCATGGATTTCGGATTCTGGAATCATTCGCCATGGAATATCAGTGGAAGTGGAAAATCCAGATGGAAACTTGTTACCTCTTCAAAGACGCCGAGAATTTCCGATAGACAGCAAGAAGTATTGTTACAATCTAAGCACCAAAGAGAGAAGGCGATATCTTGTACGAGCAACATTCTTGTATGGTGTGACTGAAAGTACCTACCCCAAATTTCAGCTCTACTTGGATGCAACTAGGTGGTCAACTGTGGCTGTGTTGGATGCTTCAACAGTATATGTTAAGGAGATGATCATAAGGGCACCCTCTACATCAATTGATGTGTGCGTATGCTGTGCAACAACAGGTTCTCCATTTATATCCGCTCTTGAATTGAGGCCTTTGAATCTTTCAATGTATGCCACCGATTTTGAGGATGAGTTCTATTTAAAGGTAGCAGCAAGAGTAAATTTTGGCGCTCTAACCAAGGAGCTTCAATCACATAAAGAGAACTGTTTTCTCAGGTACCCAGATGATCCCTATGACCGTATATGGGATTCAGATCTCAACAAGAGGCAAAATTATCTTGTAGGGGAGGCCCCTGGTACAGAAAGAGTCAATACAACAAAGGACATAAATACAAACACAAGAGAATACCCACCTGTTAAAGTAATGCAAACTGCAGTTGTTGGCACTAAAGGGAGGGTCAGCTACAGGTTAGACCTTGAAGATTTCCCTGCCAATGCTCGAGCATATGCATACTTTGCGGAAATCGAAGAGTTAAGATCCAATGAAACTCGGAAATTTAAAATGGAGCAGCCTTACGTTCCCGACTACAGTAATGCCGTGGTCAATATTGCTGAGAATGCCAATGGAAGCTACACTCTGTATGAACCCAGCTACATGAATGTAACACTGAATTTTGTGTTGTCATTTTCCTTTGTAAAGACCACGGATTCTACTCGAGGTCCACTGCTAAGTGCAATTGAAATAAGTAAATATGAGCAGATTGCCTCAAAGACAGATAAGCGAGATGTGAATACTCTTGATGTTCTTCGCTCCATGTCTCTGGAAAGTGATTGGGCGGATGAGGAAGGTGATCCGTGTGTCCCAGCTCAGTGGGACTGGGTGACTTGCAGCTCTACAGTGCCCCCAAGAATCACAAAAATAACACTGTCTGGCAAGAATTTGAAGGGTGAAATCCCATCTGAGCTTAAGAACATGGAGGGATTAACAGAGTTGTGGTTGGATGGCAACTCACTCACTGGGCCAATCCCGGATATCAGTAGCCTCATCAAATTGAAAATTTTGCATCTAGAGAACAACAGATTGACTGGTCTGTTACCTCCTGGTCTTGGTAGTTTGCCAAGCTTACAAAAATTATACATACAGAACAACTCTTTGAAGGGGGAAGTCCCTCAAGCTTTATTAACGGGAAACATAACTTTAGACTATAGAGATAATCCTGGTCTAAGTCGTGGGGACAAGCATAAGACACGTCATAAAGTGATACTCGGAGCTTCAGTTGGAGTACTTGCAGCTCTTTTTATTCTATTTTTGGGCAGTTTGGTACTACTCCGTTACCTTCGGAAAAAGACATCCACAAAGACTGATGACAAAGGTGATTCTTTGCACACCAACACAAAACGTTCAACTGGCTATTCAATAGCCAGAGGTGGGAGCTTAATGGATGAAGGGATCGCCTACTATATTCCACTCAATGAGATAGAAGAAGCTACTAATAGTTTTTCAACAAAACTTGGTCAAGGAAGTTTTGGACCCGTCTATTATGGAAAAATGAAAGACGGAAAAGAGATAGCAGTTAAGATCATGGCTGATTCATCTAGCCATGCCACCAAGCAATTTGTGACCGAGGTTGCTCTCTTGTCAAGAATTCACCACAGAAACTTGGTTCCTTTAATCGGATACTGCGAGGAGGAATACCAACGTATGCTGGTTTATGAATATATGCACAACGGAACTTTGCGAGATCATATACATGATTCTGTCAACAAGAAGCACTTAGACTGGCTAGCTCGCCTTCAACTCGCAGAAGACGCAGCTAAAGGGCTGGAGTACTTACACACTGGATGCAACCCCGGTATCATTCACCGGGATGTCAAAACAAGCAATATCCTCCTAGACATCAATATGAGAGCCAAAGTATCTGATTTTGGACTTTCAAGGCAAGCTGAAGAAGACCTAACTCATATATCAAGTGTAGCACGAGGAACCATAGGCTACCTTGACCCTGAGTACTATGCAAATCAACAATTGACCGAAAAAAGCGATGTTTATAGTTTTGGGGTTGTTCTCCTAGAACTAATTTCTGGAAGAAAGCCCATCATCTCCACAGAAGATTATGGGGCAGGGAGTATCGTCCACTGGGCAAGATCGTTGATTCGCAAAGGTGATGTAATAAGCGTCATCGATCCTACCCTAGCAGGGAGTGTGAAAATTGAATCCATATGGAGGATAGCAGAGGTTGCAATCCAGTGTGTGGAACAACACGGAGCTTCACGGCCTAGGATGCAAGAAATCATAATGGCTATACAAGACTCCATCAAGATTGAAAAAGGAAGTGATAAAATATCTGCAGGAAATTCGAGAGCACAATCTTCACGAAAAACATTACTAACAAGCTTTCTTGATATTGAAAGCCCAGATCTATCTAATGGATGCCTTGTCCCATCTGCAAGATAA

Network for GWHGAAZE023006

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	4	343	1.80E-84
PF13855.7	LRR_8	420	478	1.10E-06
PF07714.18	PK_Tyr_Ser-Thr	593	859	3.20E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-I-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.370
	SRR3591706	second leaf	32.702
	SRR3591707	mature leaf	44.382
	SRR3591708	Shoot apex	30.312
	SRR3591709	Stem	37.889
	SRR3591710	White floral bud	15.681
	SRR3591711	White flower	14.883
	SRR3591712	Green floral bud	35.810
	SRR3591713	Yellow flower	8.594
SRP173429	SRR8316895	Juvenile bud stage	14.208
	SRR8316896	Juvenile bud stage	23.372
	SRR8316897	Juvenile bud stage	12.175
	SRR8316894	Third green stage	13.541
	SRR8316900	Third green stage	29.038
	SRR8316901	Third green stage	26.211
	SRR8316898	Complete white stage	1.672
	SRR8316899	Complete white stage	20.010
	SRR8316903	Complete white stage	3.444
	SRR8316902	Silver flowering stage	2.009
	SRR8316904	Silver flowering stage	2.468
	SRR8316905	Silver flowering stage	1.267
	SRR8316906	Gold flowering stage	2.522
	SRR8316907	Gold flowering stage	2.589
	SRR8316908	Gold flowering stage	3.565
SRP132670	SRR6706286	Control	18.777
	SRR6706287	Light intensity 50%	19.488
	SRR6706288	Light intensity 20%	18.492
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.192
	CNS0095593	Slightly white alabastrum(diploid) 2	17.845
	CNS0095594	Slightly white alabastrum(diploid) 3	22.834
	CNS0095595	Whole white alabastrum(diploid) 2	15.357
	CNS0095596	Whole white alabastrum(diploid) 3	18.129
	CNS0095597	Whole white alabastrum(diploid) 4	19.412
	CNS0095598	Silvery flower (diploied) 1	13.646
	CNS0095599	Silvery flower (diploied) 2	7.645
	CNS0095600	Silvery flower (diploied) 3	8.038
	CNS0095601	Golden flower (diploid) 1	10.983
	CNS0095602	Golden flower (diploid) 2	9.913
	CNS0095603	Golden flower (diploid) 3	10.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.743
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.766
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.078
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.347
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.443
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.236
	CNS0095610	Silvery flower (tetraploid) 1	11.411
	CNS0095611	Silvery flower (tetraploid) 2	10.282
	CNS0095612	Silvery flower (tetraploid) 3	7.677
	CNS0095613	Golden flower (tetraploid) 1	3.470
	CNS0095614	Golden flower (tetraploid) 2	6.433
	CNS0095615	Golden flower (tetraploid) 3	2.818
CRA001975	CRR073297	Stem 1	22.059
	CRR073298	Stem 2	19.495
	CRR073299	Stem 3	15.396
	CRR073300	Leaf 1	19.373
	CRR073301	Leaf 2	20.109
	CRR073302	Leaf 3	14.295
	CRR073303	Juvenile bud 1	9.586
	CRR073304	Juvenile bud 2	4.883
	CRR073305	Juvenile bud 3	13.092
	CRR073306	Third green 1	0.789
	CRR073307	Third green 2	0.736
	CRR073308	Third green 3	0.903
	CRR073309	Second white 1	0.981
	CRR073310	Second white 2	1.320
	CRR073311	Second white 3	1.180
	CRR073312	Silver flowering 1	0.511
	CRR073313	Silver flowering 2	1.059
	CRR073314	Silver flowering 3	1.589
	CRR073315	Gold flowering 1	5.419
	CRR073316	Gold flowering 2	10.495
	CRR073317	Gold flowering 3	3.023
	CRR073318	Tawny withering 1	16.452
	CRR073319	Tawny withering 2	14.934
	CRR073320	Tawny withering 3	14.444