Gene detail

Detail information of GWHGAAZE016585

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002280668.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Vitis vinifera]
Swissprot	tr\|C0LGS2\|Y4361_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (Precursor)
trEMBL	tr\|V4T580\|V4T580_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR48347.1}
TAIR10	AT1G75640.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79133207	79136617	-
GWHAAZE00000004	mRNA	79133207	79136617	-
GWHAAZE00000004	exon	79136321	79136617	-
GWHAAZE00000004	exon	79133207	79136164	-
GWHAAZE00000004	CDS	79136321	79136617	-
GWHAAZE00000004	CDS	79133207	79136164	-

Transcript Sequence
>GWHTAAZE016605 ATGTCATCAACGGCTATTTTTCTTTACCTCGCCGCGGTGCTGTGCGCCACCGGCGTAACAACCGTAACATGCGCCCAACAGAACCCCGACACCGTGACGGAGATACAAGCTCTCACTTCGTTCAAGTTAAATGTAGAAGATCCGCTCGGCGCATTGGACGGCTGGAATTCATCAACGCCAGCAGCTCCGTGTGACTGGCGCGGCATTAGCTGTTTCGACGGAAGAGTTCGCGAGCTCCGCCTCCCTCGTCTCCAACTATCCGGCCGGCTTACTGACCAGCTCGCTAACTTGCGCCAGAATGTGGCTCACAACTTTCTTACCGGAGAAATCTTCGGTGAACTTCCGGTGAGCCTACTGTACCTGGACCTCTCATTAAATAACTTCTCAGGTGAATTACCGGCGAGAATATCTTCTCCTTCTCAACTCAGGCTAGTAAATTTTTCCTTCAATTCGTTCTCCGGAGAAATTCCTTCTTCCATCGGAGAATCGCAAAATCTCCAGTACTTATCACTCGACTCGAATCAATTATACGGTACTATTCCTTCGGCCATTGCCAACTGTTCCTCGCTTATCCATTTTAGCGCCGGTGATAATTTTCTCGGAGGTCTAATTCCGGCGAGTATTGGTTCTCTTCCGAGGCTTGAAGTGATTTCTCTTTCAAACAATGGACTTACAGGTTCGGTCCCCGCATCTCTATTCTGCAATGACTCAGTGAACTCCTCATCAATAAGAATTGTTCAGCTAGGGTTTAATGCGTTCACGGGATTAGTTAATCCCCCAAATTTGGTGTGCTCCAGTGGTGTATACCTTTTAGACCTTCACGAGAATCACATAAACCAATTGTTTCCTTATTGGATAACAAATATTTCATCTCTCACAAGTTTGGATCTGTCCGGAAATTCATTCTCCGGCGAGGTAACCGCGGAAATAGGCGAACTACGCAGGCTGGAGGAGCTCAGATTGGCCAACAATTCTCTATCTGGTGAAATCCCTAACGAAATTCAAAATTGTAGTTTTTTGAGAGTGCTTGATCTAGAACGAAACCGTTTCTCGGGTTTGGTTCCTGAATTTTTGGGAAATTTGAAAAGCTTGAATACTCTTTCTCTGGGAGGAAATCTTTTGTCTGGTTCGATTCCTTCGAGTTTTGGCACCCTTTTTCAGCTGGAGTTGTTAAATTTGGGCGATAATAAGTTGACTGGAACAGTACCAGAAGAATTAATCCAGCTTGGGAACCTGAGTAGTTTGAATTTGAGCAACAACAAATTCTCCGGCGAAATACCGGCACGTATTGGGGAATTGAAGGGTTTGATTTTTCTAAACATGAGTGGTTGTGGGTTTTTCGGTAGTGTTCCTTCTAGTGTTGGAAATTTGCTTAAGCTCACAGTTCTTGATTTGAGTAAACAAAATCTTGATGGGCAATTGCCCTTTGAGCTTTTTGGGTTACCAAGTCTACAAATTGTTGCTCTTGATATGAATTTGTTATCTGGTGAAGTTCCTCAAGGTTTTAGTAGCTTATCAAGTTTACAGTATTTGAATCTTTCATCAAATGGCTTCACTGGTGAGATTCCTAGAGAGTATGGCTTTCTTTTATCTCTAATGGTTCTTTCACTATCACAAAACCAAATTCGAGGCTTGGTTCCTAATGAAATTGGCAATTGTTCTGCTCTTGAAGCACTAGAGCTTCGTAGGAATCATTTGAGCGGCCACATTCCCGATGATCTATCGCGCTTATCTCATTTGAAGGTTCTTGATTTGGGTCAAAACAGTTTAACAGGTGAAATCCCAGAGAACATCTTGAATTGTTCGTCTCTTAGTTCATTGTTACTAGATTCAAATCATATTTCGGGTCATATACCGAACTCGTTCTCAAGGTTATCGAGTCTCACAGCACTGGATCTTTCGTCAAACAGTTTGAGCGGAGCCATTCCAATGGATCTTTCGCTCATTCCGGGGTTGAAATACTTAAATCTATCCAATAATGAGCTCGAGGGTGAGATTCCAAAGGCGTTGGGTTCCCGATTCAACGATGCTTCTGTATTTGCGATGAATAGAAAATTATGCGGGAAGCCAGTGAAAAGAATTTGCAAGAATGTTAAAAGGAGAAAGAGGAGGAAACTGATTTTACTAATATGTGCTGGTGTAGGAGGGTGTTGCATTTTGGCCTTGTGTTGTTGTGGGTACATTTTTGGCCTACTGAAGTGGCGAAAGAAGCTTAAAGAAGGTGCTAACGGAGAGAAGAAGCCAAGCCCAACCCGTGCCGGTTCCGGTTCGGACGTGGGCCGTGGAAGCGGAGAAAATGGAGCACCGAAACTTGTTATGTTCAACAAGAAGATAACATACGAAGAGACGGTTGAAGCCACAAGGCAGTTCGATGAGGAACATGTACTAAGTAGGGGAAAATATGGGCTTTTGTTCAAAGCAACCTTCGCAGATGGAATGGTGCTTGCAATCCGCCGTCTTCCTGACATGTCCGTGGAGAGAGGAACGTTCCGGAAAGAAGCAGAATCTCTTGGGAAGATCAAACATCGGAATCTAACCGTCCTTCGAGGGTACTACACAGGCCCACCCGACATTCGGCTACTCGTCTACGACTACATGCCTAATGGAAATTTAGCCACATTGCTTCAAGAGGCATCACACCATGATGGGCATGTACTAAACTGGCCAATGCGCCACCTAATAGCACTAGGCATTGCTCGTGGGCTAGCTTTCTTGCACTCAAACTCAATGGTTCATGGTGATATAAAGCCTCAAAACGTGCTATTTGATGCGGATTTCGAAGCCCATTTGTCCGATTTCGGGCTTGAAAAGTTAACCAAACCAACACAAGCGGAGGCTTCATCTTCAACAACTCCAATTGGTACAGTCGGATACGTCTCCCCTGAGGCTATGTTAACGGGTCAATCGAGTAGAGAAGGCGATGTTTACAGCTTCGGGATAGTGTTGTTAGAAGTACTAACAGGGAGGAAGCCAGTAATGTTTACACAAGATGAGGATATTGTTAAGTGGGTTAAGAGGCAGCTACAAAGGGGTCAAATATCCGAATTGTTGGAGCCGGGTCTGCTCGAACTTGACCCAGAATCATCCGAATGGGAAGAGTTCCTGTTAGGTTTGAAAGTCGGGTTGCTTTGCACCGCTACGGACCCAATTGAAAGGCCATCTATGGCCGATGTTGTGTTCATGCTTGAAGGATGCCGGGTTGGCCCGGATATGCACTCCTCGGCGGATCCGACATCGCTGCCTTCCCCTGTTTGA

Network for GWHGAAZE016585

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	71	6.00E-08
PF13855.7	LRR_8	165	224	1.90E-06
PF13855.7	LRR_8	268	326	3.40E-07
PF13855.7	LRR_8	340	398	4.60E-08
PF13516.7	LRR_6	506	521	1.2
PF00560.34	LRR_1	579	601	0.49
PF13855.7	LRR_8	603	662	6.60E-09
PF00069.26	Pkinase	792	1058	6.50E-35

Protein Sequence

>GWHPAAZE016595
MSSTAIFLYLAAVLCATGVTTVTCAQQNPDTVTEIQALTSFKLNVEDPLGALDGWNSSTPAAPCDWRGISCFDGRVRELRLPRLQLSGRLTDQLANLRQNVAHNFLTGEIFGELPVSLLYLDLSLNNFSGELPARISSPSQLRLVNFSFNSFSGEIPSSIGESQNLQYLSLDSNQLYGTIPSAIANCSSLIHFSAGDNFLGGLIPASIGSLPRLEVISLSNNGLTGSVPASLFCNDSVNSSSIRIVQLGFNAFTGLVNPPNLVCSSGVYLLDLHENHINQLFPYWITNISSLTSLDLSGNSFSGEVTAEIGELRRLEELRLANNSLSGEIPNEIQNCSFLRVLDLERNRFSGLVPEFLGNLKSLNTLSLGGNLLSGSIPSSFGTLFQLELLNLGDNKLTGTVPEELIQLGNLSSLNLSNNKFSGEIPARIGELKGLIFLNMSGCGFFGSVPSSVGNLLKLTVLDLSKQNLDGQLPFELFGLPSLQIVALDMNLLSGEVPQGFSSLSSLQYLNLSSNGFTGEIPREYGFLLSLMVLSLSQNQIRGLVPNEIGNCSALEALELRRNHLSGHIPDDLSRLSHLKVLDLGQNSLTGEIPENILNCSSLSSLLLDSNHISGHIPNSFSRLSSLTALDLSSNSLSGAIPMDLSLIPGLKYLNLSNNELEGEIPKALGSRFNDASVFAMNRKLCGKPVKRICKNVKRRKRRKLILLICAGVGGCCILALCCCGYIFGLLKWRKKLKEGANGEKKPSPTRAGSGSDVGRGSGENGAPKLVMFNKKITYEETVEATRQFDEEHVLSRGKYGLLFKATFADGMVLAIRRLPDMSVERGTFRKEAESLGKIKHRNLTVLRGYYTGPPDIRLLVYDYMPNGNLATLLQEASHHDGHVLNWPMRHLIALGIARGLAFLHSNSMVHGDIKPQNVLFDADFEAHLSDFGLEKLTKPTQAEASSSTTPIGTVGYVSPEAMLTGQSSREGDVYSFGIVLLEVLTGRKPVMFTQDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGLKVGLLCTATDPIERPSMADVVFMLEGCRVGPDMHSSADPTSLPSPV

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.564
	SRR3591706	second leaf	1.869
	SRR3591707	mature leaf	0.051
	SRR3591708	Shoot apex	8.515
	SRR3591709	Stem	0.305
	SRR3591710	White floral bud	0.374
	SRR3591711	White flower	0.583
	SRR3591712	Green floral bud	0.333
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.248
	SRR8316896	Juvenile bud stage	1.110
	SRR8316897	Juvenile bud stage	0.266
	SRR8316894	Third green stage	0.438
	SRR8316900	Third green stage	0.319
	SRR8316901	Third green stage	0.233
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.334
	SRR8316903	Complete white stage	0.110
	SRR8316902	Silver flowering stage	0.011
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.017
	SRR8316906	Gold flowering stage	0.062
	SRR8316907	Gold flowering stage	0.088
	SRR8316908	Gold flowering stage	0.041
SRP132670	SRR6706286	Control	0.152
	SRR6706287	Light intensity 50%	0.314
	SRR6706288	Light intensity 20%	0.320
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.294
	CNS0095593	Slightly white alabastrum(diploid) 2	0.848
	CNS0095594	Slightly white alabastrum(diploid) 3	0.605
	CNS0095595	Whole white alabastrum(diploid) 2	0.329
	CNS0095596	Whole white alabastrum(diploid) 3	0.073
	CNS0095597	Whole white alabastrum(diploid) 4	0.261
	CNS0095598	Silvery flower (diploied) 1	0.472
	CNS0095599	Silvery flower (diploied) 2	0.757
	CNS0095600	Silvery flower (diploied) 3	0.285
	CNS0095601	Golden flower (diploid) 1	0.327
	CNS0095602	Golden flower (diploid) 2	0.338
	CNS0095603	Golden flower (diploid) 3	0.234
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.632
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.143
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.381
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.024
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.045
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.310
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.128
	CNS0095612	Silvery flower (tetraploid) 3	0.098
	CNS0095613	Golden flower (tetraploid) 1	0.014
	CNS0095614	Golden flower (tetraploid) 2	0.017
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	2.188
	CRR073298	Stem 2	1.544
	CRR073299	Stem 3	2.192
	CRR073300	Leaf 1	0.777
	CRR073301	Leaf 2	0.193
	CRR073302	Leaf 3	0.257
	CRR073303	Juvenile bud 1	0.080
	CRR073304	Juvenile bud 2	0.020
	CRR073305	Juvenile bud 3	0.155
	CRR073306	Third green 1	0.013
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.044
	CRR073313	Silver flowering 2	0.201
	CRR073314	Silver flowering 3	0.001
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.849
	CRR073319	Tawny withering 2	0.318
	CRR073320	Tawny withering 3	1.517