Gene detail

Detail information of GWHGAAZE014920

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006466917.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Citrus sinensis]
Swissprot	tr\|C0LGS2\|Y4361_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (Precursor)
trEMBL	tr\|W9SN33\|W9SN33_9ROSA	Putative LRR receptor-like serine/threonine-protein kinase {ECO:0000313\|EMBL:EXC35387.1}
TAIR10	AT4G36180.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21618236	21621616	+
GWHAAZE00000004	mRNA	21618236	21621616	+
GWHAAZE00000004	exon	21618236	21621616	+
GWHAAZE00000004	CDS	21618236	21621616	+

Transcript Sequence
>GWHTAAZE014934 ATGGCGACTGTTACTCTCCTCTTCTTCCTCATTATCTCCACCACCATGCTAACATGCGCCGACCGGACTCCTGAAATCCAAGCCTTAATCTCCTTCAAACTCAACCTCCATGATCCTCTCGGAGCTCTCTCCGGCTGGGATTCCTCCACGCCGGCGGCTCCCTGCGACTGGCGCGGCGTCTTTTGCACCGCCGCCCGAGTCCGCGAGCTACGATTACCTAGCCTCCAGCTCGCCGGAAAACTCACCGACCAAATATCCAACCTGCAAATGCTTCGTAAGCTTAGCCTCCGCTCAAACTACTTTAACGGTACCATTCCTTCTTCTCTCTCCAAATGCACTCTCTTAGACTCAATCTTCTTACAATACAACTCCTTCACTGGAATTCTCCCGCCGGACATCTCTAATCTCACCGAACTTTTAGTCCTCAATGTCGCCGGAAATCGTCTCTCCGGTGATCTCCCTTACAACCTCCCTCAGAGTCTCCGCCTCTTTGATGTCTCGTCAAATTCATTTTCCGGCATTATACCTAAAAACTTAGCTAATTTAAATCAGATTCAACTGATCAATCTGTCGTATAATAACCTCACCGGCGCTATTCCGGCGAGGTTAGGTGAGCTACAACAACTACAGTACCTGTGGCTCGATTACAACCTCTTGGACGGAACGTTACCGTCGGCGATGGCAAACTGTTCTTCGCTCGTGCATTTTAGCGCCGACGGTAACGCCATCGGAGGTGTGCTACCGTCGGCCATTGGTGTGCTTCCGAAGCTTCAAGTCATTTCTCTATCGCACAATAATCTCTCAGGCTCGGTGCCGTATTCGATGTTCTGTAATGTCTCTGTTTATTCTCCATCGATTCGTAATGTTCAATTAGGTTTTAATTCGTTCACAGACATTGCTGTACCAAATAAGGCTCCGTGTATTAGTGCTCTGCAAGTTTTGGATCTTCAGCAGAATGATATACATGGCGAGTTCCCTCTTTGGTTGATGAATATTTCAGCATTAACAATGCTGGATGTTTCAGGCAACTGGATTTCTGGTACTATTCCGGCAGAGATCGGAAATTTTTGGAGATTAGAGGAACTAAAGATGGCTAATAATTCATTGATCGGTGCTGTTCCAGTTGAGATCATGAAGTGCAGTAATTTGCGAGTTCTTGATCTCGAAGGAAATCAATTTACAGGGGAAATTCCTTTTTTCTTGAGTGAGATGAGAAGTTTGAAGATGTTATCACTTGGAGGGAATCAATTCTCTGGTTTGCTTCCTTTGAGTTTTGCCAATCTTACAGTGCTTGAAATATTGAACTTAAGAGATAATAGCCTCAACGGAAGCTTACCTGAACAGCTTATGTTATTGAGCAATCTGACCGAGTTAAACCTCAGTGGCAACAAGTTTTTGGGTATTATCCCTGCAAATATTGGGAATTTAAGGCAGTTATCGGTTCTTAACCTGAGCCGGAATGGTTTTTGGGGTCCTATCCCGGCTAGTATTGGGAGTCTTTATAAGCTAATGACTCTTGATTTGAGCAAACAGAATCTCTCAGGCTTGTTGCCTCTTGATCTTGCAGGTTTGCCGAATTTGCAAGTCATTGCTTTGCAAGACAATATGTTGTCTGGTGATGTTCCTGAAGGCTTCAGTAGTTTGTCCGGTTTGCGCTACTTGAACCTATCTTCCAATGCTTTTTCGGGTCACATTCCATCTACATTCGGCTATCTTAAGTCATTACTTGTTCTCTCGTTGTCGGAAAATCACATAACTGGTTCCATTCCGCCCGAGCTAGGCAATTGTTCGAATCTTGAAACTTTGGGTCTTGGTTCAAATTCTTTGAGTGGTTGGATCCCCGTTGATCTCTCTCGTCTCTCCCATTTGAATGAGCTTGATTTGGGAGGGAACAATCTGACAGGCGAAATCCCAGATGAAATCTCCAAATGCCCTGCTCTAACTGCACTGGCACTAGACTCTAATCATATTTCGGGTAACATACCAGCCTCACTGTCCAATTTGTCCAACCTAAGATTGCTGGATCTCTCTGCAAATAACTTGACTGGCGAGATCCCAACAAATCTTACACTCATCTCAACCTTAGTAAGCTTCAATGTATCGAATAATAACCTAGAAGGTGAGATACCCGTAATGCTGGGTTCCCGGTTCAACAATCTACAGGCATTTGCAGGTAATCGGGACTTATGTGGGAAGCCATTGAGTAAGAAATGTGAGGGGATTAGTAGTGGTAATAGGAAGAGGCTAATACTGTTAATTGCTGTGGCTGCAAGTGGAGCTTGCCTAATGGCATTCCTCTGCTGGTTCTACATCTTTAGCCTGCTGAGGTGGCGCAAGCGACTCAAAGAAAAAGAAGCTGGTGAGAAGAAGCGTAGCCCTGGAAGGGCGAGCTCGAGGACAAGTGGAGGCCGAAGCAGTAGTGAAAGCGGGGGGCCAAAGCTCATTATGTTCAACGACAAGATCACGCTTGCCGAAACAATAGAAGCAACGAGGCAATTCGATGAGGAAAGTGTGCTGAGCAGAACCCGTTACGGTCTAGTGTTCAAGGCGATTTACAACGATGGAATGGTACTCTCGATCCGCAGGCTCCCAAACGGATCACTCGACGACAACACATTCCGAAAAGAAGCCGAGTCATTGGGGAGAGTGAAGCACCGAAACCTAACTGTACTCCGCGGTTACTACACCGGTGCACCTGACCTGAAACTCCTGGTCTATGATTATATGCCTAATGGGAACCTCTCAACGCTACTCCAAGAAGCGTCTCACCAAGATGGTCATGTCCTCAATTGGCCAATGCGTCACCTCATCGCACTTGGAGTTGCACGAGGGCTCGCCTTTCTACACACGGCCACAATTGTTCATGGTGATATCAAGCCACAAAGTATACTATTTGATGCGGATTTCGAAGCCCATCTCTCTGATTTTGGCCTAGACAGGCTCACTATATCATCCCCGGCTCAACCTTCCACTTCAAATACAGCCGGGACTTTGGGGTACGCATCACCGGAATCAACATTAACGGGTGAAGTAACCAAGGAATCGGATGTTTACAGCTTCGGCATAGTATTACTCGAACTACTAACGGGTAAAAGGCCGGTGATGTTTAGCCAAGATGAGGATATAGTCAAGTGGGTGAAGAAGCAGTTGCAAAAGGGTCAAGTCTCAGAATTGTTAGAACCGGGATTGCTTGAGCTAGACCCCGAATCATCCGAGTGGGAGGAGTTCTTGTTGGGAGTGAAAGTGGGCTTGCTTTGTACAGCCCCGGATCCATTGGACCGACCCACCATGGCCGACATCGTGTTCATGCTCGAAGGTTGCCGTGTTGGTCCTGATATTCCGTCGTCGGCCGACCCCACTTCTCAACCTTCTCCGGCATGA

Network for GWHGAAZE014920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	24	62	9.90E-10
PF13855.7	LRR_8	160	219	2.10E-06
PF00560.34	LRR_1	382	398	1.5
PF13855.7	LRR_8	405	465	7.70E-08
PF13855.7	LRR_8	502	560	1.00E-08
PF13855.7	LRR_8	597	657	5.10E-08
PF00069.26	Pkinase	843	1100	3.70E-32

Protein Sequence

>GWHPAAZE014927
MATVTLLFFLIISTTMLTCADRTPEIQALISFKLNLHDPLGALSGWDSSTPAAPCDWRGVFCTAARVRELRLPSLQLAGKLTDQISNLQMLRKLSLRSNYFNGTIPSSLSKCTLLDSIFLQYNSFTGILPPDISNLTELLVLNVAGNRLSGDLPYNLPQSLRLFDVSSNSFSGIIPKNLANLNQIQLINLSYNNLTGAIPARLGELQQLQYLWLDYNLLDGTLPSAMANCSSLVHFSADGNAIGGVLPSAIGVLPKLQVISLSHNNLSGSVPYSMFCNVSVYSPSIRNVQLGFNSFTDIAVPNKAPCISALQVLDLQQNDIHGEFPLWLMNISALTMLDVSGNWISGTIPAEIGNFWRLEELKMANNSLIGAVPVEIMKCSNLRVLDLEGNQFTGEIPFFLSEMRSLKMLSLGGNQFSGLLPLSFANLTVLEILNLRDNSLNGSLPEQLMLLSNLTELNLSGNKFLGIIPANIGNLRQLSVLNLSRNGFWGPIPASIGSLYKLMTLDLSKQNLSGLLPLDLAGLPNLQVIALQDNMLSGDVPEGFSSLSGLRYLNLSSNAFSGHIPSTFGYLKSLLVLSLSENHITGSIPPELGNCSNLETLGLGSNSLSGWIPVDLSRLSHLNELDLGGNNLTGEIPDEISKCPALTALALDSNHISGNIPASLSNLSNLRLLDLSANNLTGEIPTNLTLISTLVSFNVSNNNLEGEIPVMLGSRFNNLQAFAGNRDLCGKPLSKKCEGISSGNRKRLILLIAVAASGACLMAFLCWFYIFSLLRWRKRLKEKEAGEKKRSPGRASSRTSGGRSSSESGGPKLIMFNDKITLAETIEATRQFDEESVLSRTRYGLVFKAIYNDGMVLSIRRLPNGSLDDNTFRKEAESLGRVKHRNLTVLRGYYTGAPDLKLLVYDYMPNGNLSTLLQEASHQDGHVLNWPMRHLIALGVARGLAFLHTATIVHGDIKPQSILFDADFEAHLSDFGLDRLTISSPAQPSTSNTAGTLGYASPESTLTGEVTKESDVYSFGIVLLELLTGKRPVMFSQDEDIVKWVKKQLQKGQVSELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADIVFMLEGCRVGPDIPSSADPTSQPSPA

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.234
	SRR3591706	second leaf	0.155
	SRR3591707	mature leaf	0.068
	SRR3591708	Shoot apex	7.412
	SRR3591709	Stem	5.178
	SRR3591710	White floral bud	6.554
	SRR3591711	White flower	2.537
	SRR3591712	Green floral bud	1.159
	SRR3591713	Yellow flower	0.255
SRP173429	SRR8316895	Juvenile bud stage	0.646
	SRR8316896	Juvenile bud stage	0.598
	SRR8316897	Juvenile bud stage	0.084
	SRR8316894	Third green stage	0.490
	SRR8316900	Third green stage	0.576
	SRR8316901	Third green stage	0.606
	SRR8316898	Complete white stage	1.665
	SRR8316899	Complete white stage	3.299
	SRR8316903	Complete white stage	6.199
	SRR8316902	Silver flowering stage	1.965
	SRR8316904	Silver flowering stage	3.998
	SRR8316905	Silver flowering stage	0.165
	SRR8316906	Gold flowering stage	0.360
	SRR8316907	Gold flowering stage	0.821
	SRR8316908	Gold flowering stage	0.250
SRP132670	SRR6706286	Control	0.903
	SRR6706287	Light intensity 50%	0.958
	SRR6706288	Light intensity 20%	0.682
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.590
	CNS0095593	Slightly white alabastrum(diploid) 2	0.988
	CNS0095594	Slightly white alabastrum(diploid) 3	1.198
	CNS0095595	Whole white alabastrum(diploid) 2	0.322
	CNS0095596	Whole white alabastrum(diploid) 3	0.129
	CNS0095597	Whole white alabastrum(diploid) 4	0.262
	CNS0095598	Silvery flower (diploied) 1	0.685
	CNS0095599	Silvery flower (diploied) 2	0.504
	CNS0095600	Silvery flower (diploied) 3	1.158
	CNS0095601	Golden flower (diploid) 1	0.439
	CNS0095602	Golden flower (diploid) 2	0.628
	CNS0095603	Golden flower (diploid) 3	0.331
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.131
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.688
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.458
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.589
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.062
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.439
	CNS0095610	Silvery flower (tetraploid) 1	0.423
	CNS0095611	Silvery flower (tetraploid) 2	0.116
	CNS0095612	Silvery flower (tetraploid) 3	0.233
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.066
	CNS0095615	Golden flower (tetraploid) 3	0.017
CRA001975	CRR073297	Stem 1	2.332
	CRR073298	Stem 2	2.422
	CRR073299	Stem 3	3.146
	CRR073300	Leaf 1	1.448
	CRR073301	Leaf 2	1.228
	CRR073302	Leaf 3	1.401
	CRR073303	Juvenile bud 1	0.949
	CRR073304	Juvenile bud 2	2.265
	CRR073305	Juvenile bud 3	4.021
	CRR073306	Third green 1	1.709
	CRR073307	Third green 2	3.913
	CRR073308	Third green 3	5.864
	CRR073309	Second white 1	2.023
	CRR073310	Second white 2	1.375
	CRR073311	Second white 3	2.743
	CRR073312	Silver flowering 1	2.284
	CRR073313	Silver flowering 2	3.174
	CRR073314	Silver flowering 3	1.271
	CRR073315	Gold flowering 1	0.190
	CRR073316	Gold flowering 2	0.432
	CRR073317	Gold flowering 3	0.422
	CRR073318	Tawny withering 1	14.780
	CRR073319	Tawny withering 2	10.970
	CRR073320	Tawny withering 3	12.547