Gene detail

Detail information of GWHGAAZE014729

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272055.2	0	PREDICTED: nodulation receptor kinase-like [Vitis vinifera]
Swissprot	tr\|Q8LKZ1\|NORK_PEA	0	Nodulation receptor kinase (Precursor)
trEMBL	tr\|A0A068U2E1\|A0A068U2E1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02685.1}
TAIR10	AT1G67720.1	3E-104	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17573074	17579938	+
GWHAAZE00000004	mRNA	17573074	17579938	+
GWHAAZE00000004	exon	17573074	17573612	+
GWHAAZE00000004	exon	17574264	17574736	+
GWHAAZE00000004	exon	17574926	17575061	+
GWHAAZE00000004	exon	17575178	17575249	+
GWHAAZE00000004	exon	17575358	17575426	+
GWHAAZE00000004	exon	17575639	17575710	+
GWHAAZE00000004	exon	17575843	17575914	+
GWHAAZE00000004	exon	17576095	17576279	+
GWHAAZE00000004	exon	17576957	17577189	+
GWHAAZE00000004	exon	17577618	17577744	+
GWHAAZE00000004	exon	17577835	17577907	+
GWHAAZE00000004	exon	17578487	17578594	+
GWHAAZE00000004	exon	17578728	17578860	+
GWHAAZE00000004	exon	17579600	17579938	+
GWHAAZE00000004	CDS	17573074	17573612	+
GWHAAZE00000004	CDS	17574264	17574736	+
GWHAAZE00000004	CDS	17574926	17575061	+
GWHAAZE00000004	CDS	17575178	17575249	+
GWHAAZE00000004	CDS	17575358	17575426	+
GWHAAZE00000004	CDS	17575639	17575710	+
GWHAAZE00000004	CDS	17575843	17575914	+
GWHAAZE00000004	CDS	17576095	17576279	+
GWHAAZE00000004	CDS	17576957	17577189	+
GWHAAZE00000004	CDS	17577618	17577744	+
GWHAAZE00000004	CDS	17577835	17577907	+
GWHAAZE00000004	CDS	17578487	17578594	+
GWHAAZE00000004	CDS	17578728	17578860	+
GWHAAZE00000004	CDS	17579600	17579938	+

Transcript Sequence
>GWHTAAZE014743 ATGAAATTTCAAGCAGGTTTTGTGAGCATACAGTGTTGTTCTGATTCAAATATTTCTGACCCAAATACCAATATCAGCTGGACAACAGACGAAAATTGGTACCCGAATAAAGAAGGCTGCCAAAACATAAGCAGGCCAGTTCAAAATGATACGAACTATGACAAAGCTAGAATTTTCAGGTCCACCTATGGTACCAAATGGTGTTATAACTTGACGACAACGAAGGGTCAGGATTATCTGATAAGGGGTACGTTTCTTTTTGGAGATGTACAAAGGACACCTCAAGGCACATTTTTCGATGCTTTGATTGGGGTCACACCAATAGGTCGAGTCAACTCGTCTGATGATAAAGAGATTGAAGGAATTTTTAAAGCTACTAATGAATATATGAACTTCTGTTTATTGAGGGAGAAAGGAGATCCTTACATTTCGAAGCTTGAACTGAGGCCTCTGAGTTCAGATTATCTGAGGACCGAACCTTCTGGTGTTCTCAAACTTGTGCATAGAATTAATGTCGGGAGCACTGGACCCGAGATCAGGTATCCAGATGACCCATACGATCGAATATGGAGACCAGAATCAAACACTGAAGTAGCCGGTCATTTCGCAAATGCCACTGCAAACATTACCATCACCAATTCTAGCACGGCAGTACCTCCTATCAAAGTTCTACAAACAGCCCTAACCAATCCAGAGCGTTTGGAGTTCCTACACGATGACCTAAAGGCTGCGCACAAGTATGAACTCTACCTTTACTTTCTTGAGCTCAACAACTCTGTTCAAGCTGGGCAACGGGTATTTGATATATATATCGACAATGAAAAGAGACAGCAGATTGATATATTGGGTGGAGGTTCCGATTACCAAGCAGTTGTTTTCAGCTTTACAGCAAATGAGATTTTTAATTTGACAATGACTAAGAGCTCAAATAACTCGCAGTTGGGGCCCATTTGTAATGCTTACGAGATTTTGCAGGTTCAGCCATTGGTTCAGGGGACTGCTCAAAAAGATGATGTGAGGAAAGAGCTACTGGAGGGTAACCAAGATAATGAAGTCTTGAAGAGTTGGTCCGGAGACCCATGTCTTCCTTTTCCCTGGCACGGTTTACACTGTGAGTCCAGTGATGGTTCCTCCATCATCACTAAGCTGGATATTTCTTTCAGTAAGCTTCAGGGGCCACTTCCTCCCAGTATCACTAAGCTGACCCACCTAATGATATTGAACATGAGCAACAATGGCTTCACTAGCACCATCCCCGAATTTCCAGCTTCCTCCAAGTTGATCTCAGTGGATCTGAGCCACAATGATCTCATGGGAATGATTCCAGAATCACTTGCCTCACTACCATATTTGACAACAATGTATTTTGGCTGCAATCCTCATTTCACCAAGGAGCTTCCTGCAAAACTTAAAAGATCAAGAATTGCTACAGACAAGGACGCGTGTGGTAATCAAGGATCACCTCATTCAGCACAAGGAATTATTATAGGCACAGCTGCTGCAAGTGGATCCATTTTAATTATTGTTGCAGTCGGGATATATTTCATATGCTTTTACAAGAAAAAAGTGGTGATGACTAGGGGAAAATTTGATGCCAAAGGATATCCAATGACAAAGAATGCAGTTTATTCAATACCCAGCATGGACGATATTGTTTTGAAGTCGATATCTATAAATATACAGAGTTTTACTCTCAATAACATAGAAGCAGCAACCCAGCAGTACAGAACTTTGATAGGTGAAGGAGGTTTTGGATCTGTTTACCGTGGTACTTTAACTGATGGTCAAGAAGTGGCTGTGAAGGTTCGCTCAGCCACTTCAACTCAGGGAACTCGAGAGTTCGATAATGAGCTGAACCTTCTCTCAGCCATTCGGCATGAGAATCTGGTGCCACTCCTTGGCTATTGTTGTGAGAATGACCAGCAAATTCTTGTCTATCCTTTTATGTCAAATGGGTCCCTACAAGATCGCCTCTACGGCGAAGCAGCAAAACGAAAGACCCTAGACTGGCCAACCAGACTTTCCATTGCTCTAGGAGCTGCTCGAGGCAACATGTGTGCTAAGGTAGCAGACTTTGGTTTTTCGAAATATGCTCCTCAAGAAGGGGATAGTGGGGCTTCTCTAGAAGTAAGAGGGACAGCTGGCTACTTGGATCCAGAGTATTATTCGACCCAGCATTTGTCTGCTAAAAGTGATGTCTTTAGCTTTGGAGTTGTGCTCCTTGAACTAATAAGCGGTCGAGAGCCTCTCAACATACGTAGGCCAAGAAATGAGTGGAGCTTGGTCGAATGGGCAAAGCCATATATAAGGAACTCAAGAATCGACGAAATAGTGGATCCAGGCATAAAGGGAGGCTACCATGCCGAGGCACTATGGAGGGTAGTGGAGGTAGCACTAGCATGTATTGAACCCTTCTCCGCTTATCGACCATGCATGGTTGACATTGTGCGGGAACTAGAGGATGCTTTAATCATAGAAAACAATGCATCTGAATACATGAAGTCCATAGATAGCTTTGGAGGATCCAACCGCTTCTCCATTGAGAGGCCCACTGTTATTATTCCACCTACTCCAACTCCAACAGAACCGTCGTCGATCCTCTCTCAACCCTCGCCTCCACGGCCAAGATAA

Network for GWHGAAZE014729

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	13	325	3.80E-52
PF07714.18	PK_Tyr_Ser-Thr	577	683	2.10E-16
PF07714.18	PK_Tyr_Ser-Thr	684	819	1.90E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-I-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.635
	SRR3591706	second leaf	0.552
	SRR3591707	mature leaf	0.402
	SRR3591708	Shoot apex	0.215
	SRR3591709	Stem	7.589
	SRR3591710	White floral bud	2.058
	SRR3591711	White flower	6.392
	SRR3591712	Green floral bud	2.713
	SRR3591713	Yellow flower	6.063
SRP173429	SRR8316895	Juvenile bud stage	0.120
	SRR8316896	Juvenile bud stage	0.164
	SRR8316897	Juvenile bud stage	0.201
	SRR8316894	Third green stage	0.192
	SRR8316900	Third green stage	0.259
	SRR8316901	Third green stage	0.144
	SRR8316898	Complete white stage	0.092
	SRR8316899	Complete white stage	0.243
	SRR8316903	Complete white stage	0.216
	SRR8316902	Silver flowering stage	3.546
	SRR8316904	Silver flowering stage	4.398
	SRR8316905	Silver flowering stage	3.437
	SRR8316906	Gold flowering stage	18.107
	SRR8316907	Gold flowering stage	18.314
	SRR8316908	Gold flowering stage	11.683
SRP132670	SRR6706286	Control	0.234
	SRR6706287	Light intensity 50%	0.218
	SRR6706288	Light intensity 20%	0.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.183
	CNS0095593	Slightly white alabastrum(diploid) 2	0.146
	CNS0095594	Slightly white alabastrum(diploid) 3	0.049
	CNS0095595	Whole white alabastrum(diploid) 2	0.244
	CNS0095596	Whole white alabastrum(diploid) 3	0.247
	CNS0095597	Whole white alabastrum(diploid) 4	0.305
	CNS0095598	Silvery flower (diploied) 1	1.909
	CNS0095599	Silvery flower (diploied) 2	1.964
	CNS0095600	Silvery flower (diploied) 3	7.996
	CNS0095601	Golden flower (diploid) 1	3.534
	CNS0095602	Golden flower (diploid) 2	7.317
	CNS0095603	Golden flower (diploid) 3	7.350
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.338
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.676
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.119
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.803
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.867
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.594
	CNS0095610	Silvery flower (tetraploid) 1	9.000
	CNS0095611	Silvery flower (tetraploid) 2	14.409
	CNS0095612	Silvery flower (tetraploid) 3	11.552
	CNS0095613	Golden flower (tetraploid) 1	4.889
	CNS0095614	Golden flower (tetraploid) 2	6.242
	CNS0095615	Golden flower (tetraploid) 3	8.727
CRA001975	CRR073297	Stem 1	0.259
	CRR073298	Stem 2	0.181
	CRR073299	Stem 3	0.034
	CRR073300	Leaf 1	0.058
	CRR073301	Leaf 2	0.050
	CRR073302	Leaf 3	0.075
	CRR073303	Juvenile bud 1	0.048
	CRR073304	Juvenile bud 2	0.277
	CRR073305	Juvenile bud 3	0.088
	CRR073306	Third green 1	3.539
	CRR073307	Third green 2	2.336
	CRR073308	Third green 3	3.735
	CRR073309	Second white 1	4.655
	CRR073310	Second white 2	7.416
	CRR073311	Second white 3	11.021
	CRR073312	Silver flowering 1	10.603
	CRR073313	Silver flowering 2	5.010
	CRR073314	Silver flowering 3	6.756
	CRR073315	Gold flowering 1	0.032
	CRR073316	Gold flowering 2	0.462
	CRR073317	Gold flowering 3	0.074
	CRR073318	Tawny withering 1	5.687
	CRR073319	Tawny withering 2	4.136
	CRR073320	Tawny withering 3	5.876