Gene detail

Detail information of GWHGAAZE014465

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02350.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LFV3\|Y5157_ARATH	0	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730
trEMBL	tr\|A0A068U1E0\|A0A068U1E0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02350.1}
TAIR10	AT5G15730.2	4E-142	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12516287	12519219	+
GWHAAZE00000004	mRNA	12516287	12519219	+
GWHAAZE00000004	exon	12516287	12516624	+
GWHAAZE00000004	exon	12517005	12517058	+
GWHAAZE00000004	exon	12517197	12517350	+
GWHAAZE00000004	exon	12517731	12517857	+
GWHAAZE00000004	exon	12518174	12518259	+
GWHAAZE00000004	exon	12518354	12518425	+
GWHAAZE00000004	exon	12518628	12518831	+
GWHAAZE00000004	exon	12518914	12519219	+
GWHAAZE00000004	CDS	12516287	12516624	+
GWHAAZE00000004	CDS	12517005	12517058	+
GWHAAZE00000004	CDS	12517197	12517350	+
GWHAAZE00000004	CDS	12517731	12517857	+
GWHAAZE00000004	CDS	12518174	12518259	+
GWHAAZE00000004	CDS	12518354	12518425	+
GWHAAZE00000004	CDS	12518628	12518831	+
GWHAAZE00000004	CDS	12518914	12519219	+

Transcript Sequence
>GWHTAAZE014479 ATGGTTCGGAAAGCTGATTTAGTGATCATTGGCATCTCTGTCGGGGTGGCTGTTGGTATTATTATAGCATCACTTGTATATTTTGGGATACAATGGTACAAAAAACGTACTCATCTTTTTCAATGGCGTGCAAGTGACACTGGTGTATCTGTTGTTCCCATACGCACCAATGGCATAGATACAAGCATTGACATAAGTGCATCTCTCTCAAATTCCGTAACTGTCAGGGGATCAGACTATCCTGCCCCTGCCAAAACTTCTCACCAGTCATGGTGGAATAATCACCATAGTAAAGATCGTTTTGCTTCAGGATCTGGCTTACCAAGATACTCATACAAGTTAGCAGGAGGCTTGAACATAGGCTTAGGAAGCAACACTACCAGCGTGAAGAGGGACATCCAAAAAGCTACACAAAACTTCACAACTATTTTAGGGCAGGGGTCTTTTGGCCCAGTATATAAAGCTACAATGCCTGCTGGTGAAGTAGTTGCTGTAAAAGCTCTCGCTTCCAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTATCTCTGCTTGGTAGGCTGCACCACCGGAATTTGGTGAATTTGGTTGGATATTGTGTTGATAAAGGCCAACACATGTTAGTTTATGAGTTCATGAGTAATGGAAGCTTGGCGAACTTTCTATATAATGAGGATAAACGGACTTTGAGTTGGGAAGAACGGCTCCAAATTGCTCTGGATATTTCTCACGGAATTGAATATCTTCACGATGGGGCAGTCCCACCTGTCATACATCGGGATTTGAAGTCTGCTAATATATTGCTAGACCAATTGATGCGAGCAAAGGTTGCTGATTTCGGGCTATCGAAGGAGGAGGTTTTTGATGGCCGCAATTCAGGCCTTAAAGGTACATACGGCTACATAGATCCCGTGTACATATCCACAAACAAGTTTACAATGAAGAGTGACATCTATAGTTTCGGCATTATACTATTTGAACTTATCACAGCCATCCACCCACATCAAAACTTAATGGAATATATCAATATGGCATCTATGAGTTCGGATGGTGTGGACGAGATACTTGACAAGAAAATCACTGGGGAATGTAACCCCGAAGATGTGAGGAGCCTTTCTCACATTGCTCACAAATGTTTGCACAGAACATTGAGAAAGCGCCCTTCGATTGGGGAAGTCTCACAGGGTATATTGAAGATAAAACAGAGGCATCTCGTTAGAGAAGATACTTCCATGTCTTTTACAGGGGAAGATTTGTCAAGAGTGCTGAGCCGGATAGAGAGTCAACACACAGAGTTGAGGAAAATGACCAGCATAGATGAGAGAGTAGCAGTTTAG

Network for GWHGAAZE014465

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	141	395	1.10E-51

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-I-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.481
	SRR3591706	second leaf	10.791
	SRR3591707	mature leaf	11.581
	SRR3591708	Shoot apex	17.883
	SRR3591709	Stem	33.231
	SRR3591710	White floral bud	19.918
	SRR3591711	White flower	25.174
	SRR3591712	Green floral bud	25.408
	SRR3591713	Yellow flower	19.930
SRP173429	SRR8316895	Juvenile bud stage	11.135
	SRR8316896	Juvenile bud stage	15.154
	SRR8316897	Juvenile bud stage	7.881
	SRR8316894	Third green stage	6.933
	SRR8316900	Third green stage	19.009
	SRR8316901	Third green stage	21.113
	SRR8316898	Complete white stage	14.559
	SRR8316899	Complete white stage	41.061
	SRR8316903	Complete white stage	18.648
	SRR8316902	Silver flowering stage	9.041
	SRR8316904	Silver flowering stage	11.575
	SRR8316905	Silver flowering stage	5.860
	SRR8316906	Gold flowering stage	24.036
	SRR8316907	Gold flowering stage	19.241
	SRR8316908	Gold flowering stage	21.691
SRP132670	SRR6706286	Control	19.792
	SRR6706287	Light intensity 50%	20.165
	SRR6706288	Light intensity 20%	22.256
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.992
	CNS0095593	Slightly white alabastrum(diploid) 2	14.333
	CNS0095594	Slightly white alabastrum(diploid) 3	12.894
	CNS0095595	Whole white alabastrum(diploid) 2	13.397
	CNS0095596	Whole white alabastrum(diploid) 3	10.982
	CNS0095597	Whole white alabastrum(diploid) 4	12.762
	CNS0095598	Silvery flower (diploied) 1	18.236
	CNS0095599	Silvery flower (diploied) 2	11.660
	CNS0095600	Silvery flower (diploied) 3	22.352
	CNS0095601	Golden flower (diploid) 1	13.668
	CNS0095602	Golden flower (diploid) 2	19.244
	CNS0095603	Golden flower (diploid) 3	17.818
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.539
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.073
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.835
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.729
	CNS0095610	Silvery flower (tetraploid) 1	23.721
	CNS0095611	Silvery flower (tetraploid) 2	21.358
	CNS0095612	Silvery flower (tetraploid) 3	16.494
	CNS0095613	Golden flower (tetraploid) 1	11.637
	CNS0095614	Golden flower (tetraploid) 2	19.871
	CNS0095615	Golden flower (tetraploid) 3	11.808
CRA001975	CRR073297	Stem 1	17.377
	CRR073298	Stem 2	15.863
	CRR073299	Stem 3	9.324
	CRR073300	Leaf 1	18.220
	CRR073301	Leaf 2	15.552
	CRR073302	Leaf 3	13.703
	CRR073303	Juvenile bud 1	17.077
	CRR073304	Juvenile bud 2	14.606
	CRR073305	Juvenile bud 3	19.110
	CRR073306	Third green 1	4.035
	CRR073307	Third green 2	3.808
	CRR073308	Third green 3	4.606
	CRR073309	Second white 1	5.968
	CRR073310	Second white 2	4.205
	CRR073311	Second white 3	4.174
	CRR073312	Silver flowering 1	3.075
	CRR073313	Silver flowering 2	2.192
	CRR073314	Silver flowering 3	3.268
	CRR073315	Gold flowering 1	18.321
	CRR073316	Gold flowering 2	21.287
	CRR073317	Gold flowering 3	12.792
	CRR073318	Tawny withering 1	22.667
	CRR073319	Tawny withering 2	27.899
	CRR073320	Tawny withering 3	23.924