Gene detail

Detail information of GWHGAAZE010758

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007034091.1	Leucine-rich receptor-like protein kinase family protein [Theobroma cacao]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|A0A061EKW3\|A0A061EKW3_THECC	Leucine-rich receptor-like protein kinase family protein {ECO:0000313\|EMBL:EOY05017.1}
TAIR10	AT3G28040.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	23830906	23835114	-
GWHAAZE00000003	mRNA	23830906	23835114	-
GWHAAZE00000003	exon	23830906	23832415	-
GWHAAZE00000003	exon	23833638	23834195	-
GWHAAZE00000003	exon	23834288	23835114	-
GWHAAZE00000003	CDS	23834288	23835114	-
GWHAAZE00000003	CDS	23833638	23834195	-
GWHAAZE00000003	CDS	23830906	23832415	-

Transcript Sequence
>GWHTAAZE010770 ATGGCCTTTCTTCATCAATTCTTCTTCTTCATTCTACTCATTAATACTGTCACATTTATATGCTGCAATGGTGAACAAGATAGTAGTACTACTGCGACGAATCTCCCATTAAACGACGATGTTTTAGGCCTCGTCGTCTTCAAATCCTCCCTCGAAGACCCGCACTCCTATCTTTCGTCGTGGAACGAAGATGATACTTCGCCGTGTTCATGGAACTTCATCAAATGCAACCCGTTTAACGGTCGTGTCACCGAGCTATCAATCGATGGGCTGAATTTGTCCGGCAAAATCGGCCGAGGCCTACAAAAACTGCAACACCTCAAGGTCTTATCGTTATCGAATAACAATTTCTCCGGTCCCATTAGTCCGTATCTACCTGCTATTCAAACACTCGAAAGGTTAAACCTCAGTGGAAACAGCCTTACTGGCCTCATTCCTGACACGACTTTTAGTAACATTAAATTCCTAGACCTCTCGAAAAACTCATTATCGGGTCCGCTCCCCGATAATATTTTCGAGAACTGTTCTGCTCTCCGGCTACTTTCTTTAGCTGAAAATCGGTTCGAAGGTCCACTGCCTAGTACACTTTCCAAATGCATCACTCTTAGCAATCTCAATTTATCCAACAATCATTTCTCCGGCAACTACCCGGCCGGAATATGGTCTTTCACGAGGCTCCGGACCCTCGACTTGTCCCGGAACATTCTCTCGGGTGAAGTACCGACCGGAGTTTCGGCCGTGCATAACTTGAAAGAGCTACTGTTGCAAGGGAATCAGTTATCAGGTTTTTTACCTAGTGATATTGGTTTTTGCCCACATTTGAGTAAACTCACCGGAGATTTCCCCTGGTGGATCGGTACAATGGTTTCCCTCCGATGGGTTGACTTTTCGGGCAATGGGTTGACCGGAGCTTTACCGACATCCGTTGGAGACTTAAAATCATTGAGTCATCTAAGTTTAGCTGATAATAAACTAAATGGGACCATACCCGAAGAATTGTTCGACATAGGATTGGACTACATTGATCTTTCTAGGAACGAAATCAGTGGTTCGATACCGGATGGTTCGGGTAAGATATTTGAAAATCTTCAAGTTTTAGACCTATCGAAAAATGGACTCACCGGAGATATTCCGGCCGAGATGGGACTTTACTCAAAGTTGAGGTACTTGAATTTGTCATGGAACCATTTTGAAACAAGAGTTCCACCAGAGTTGGGGTATTTTCAGAATCTAAGTGTGTTGGATCTTAGAAATAATGCCCTGTTTGGATCAATCCCTGGTGATATATGTGAATCTGGGAGCCTTGGAATTCTTCAGTTGGATGGAAATTCTTTGACTGGTCCCATTCCTCAGGAGATTCAAAATTGTTCATCTCTCTACCTACTGAGCTTGTCACACAACAGCTTAACTGGATCAATTCCCAAATCAATTGCAATGTTGCAAGGGCTCAAGATTCTCAAGTTGGAGTGCAACAATTTGAGTGGAGAGATCCCACAAGAACTGGGCACTCTACAAAATCTTCTTGCTGTGAACATATCCTACAACAGGCTACAAGGAAGGCTACCTGTTGGTGGTATTTTTCCAAGCTTGGATCAAAGTGCATTGCTTGGGAATTTGGGTATTTGTTCACCATTGTTAAAGGGACCATGTAAGATGAATGTCCCTAAGCCTCTTTTCCTTGATCCCTTTGCTTATAACAACCAAATGGGTAGTGGCAATGACAGGGGAAACAAGCCGAATTCGCACAACCCGAGTCACAATCGGCACCACAGATTCCTCAGTGTTTCGGCCATTGTCGCAATATTAGCCGCCGTGATTATTGCGATTGGGGTTATAGTGATAAGTTTGCTAAACATTTCGGCTCGAAGGAGGCTAGCATTTGTCGATAATGCCTTGGAGAGTATGTGCTCAAGCTCATCTCGTTCGGGTACTTTTTCGTCTGGGAAACTCATACTATTTAATGCAAAATCTCCATCACTTGATGATGATTGGGTTAGCGGCTCACCCGAAGCCCTACTCACCAAAGCGACAGAGATTGGCACCGGGGCTTTTGGGACTGTGTACAAGGCTTTTCTAGGAGGAGGGCCCGAAGGGCCAATGGTCGCGATCAAGAAGCTTGTAACGTCAAATATAATCCAATATCAAGAGGATTTTGATAGAGAGGTACGGATCTTGGCAAAAGCCAGGCATCAGAACCTGATAGAATTGAAAGGATACTATTGGACACCGCAATTGCAGCTTTTGGTGTCAGACTTAGCACCCAATGGGAGCTTACAGTCTAGACTCCATGACAGAGGCAGAGTACCTGGTACTCCACCTCTGTCCTGGCTTAACCGGTTCAAAATATTGCTCGGAACTGCAAAGGGTCTGGCCCACTTGCATCATTCGTTCCGACCACCCATCATACACTACAACATAAAGCCAAGCAACATCATGCTCGACGAGGACTTGAACCCCAAGTTATCGGATTTTGGGCTGGCGAGGCTTTTGACAAAGCTCGATAAACACGTGATTACAAGCAGATTTCAGAGTGCATTGGGGTACGTGGCCCCAGAATTAGCGTGCCAGAGCTTGAGGGTGAACGAAAAATGCGATGTTTACGGGTTTGGAGTCCTGATACTGGAGCTGGTCACCGGAAGGAGGCCAGTCGAGTATGGGGATGATAATGTGATAATACTTAAAGACCATGTCAGGCTCCTATTGGAACAGGGGAATGTGCTCGAGTGCGTCGACCAAAGAATGGGCGGTTTCCCGGAGGAGGAGGTTTTGCCGGTACTGAAACTGGCATTAGTGTGTACTTCTCAGATACCTTCGAGCAGGCCATCCATGTCGGAAGTAGTTCAAATATTGCAGGTTATTAAGACGCCTATTCCGCATAGGATGGAGGCATTCTAA

Network for GWHGAAZE010758

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	38	77	2.80E-12
PF00560.34	LRR_1	131	148	0.2
PF13855.7	LRR_8	337	397	1.30E-07
PF00069.26	Pkinase	675	948	2.60E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.850
	SRR3591706	second leaf	32.294
	SRR3591707	mature leaf	5.242
	SRR3591708	Shoot apex	22.694
	SRR3591709	Stem	1.757
	SRR3591710	White floral bud	9.535
	SRR3591711	White flower	3.017
	SRR3591712	Green floral bud	32.370
	SRR3591713	Yellow flower	0.094
SRP173429	SRR8316895	Juvenile bud stage	11.099
	SRR8316896	Juvenile bud stage	11.383
	SRR8316897	Juvenile bud stage	7.683
	SRR8316894	Third green stage	7.573
	SRR8316900	Third green stage	24.109
	SRR8316901	Third green stage	19.435
	SRR8316898	Complete white stage	2.302
	SRR8316899	Complete white stage	23.589
	SRR8316903	Complete white stage	3.901
	SRR8316902	Silver flowering stage	0.103
	SRR8316904	Silver flowering stage	0.106
	SRR8316905	Silver flowering stage	0.011
	SRR8316906	Gold flowering stage	0.035
	SRR8316907	Gold flowering stage	0.065
	SRR8316908	Gold flowering stage	0.096
SRP132670	SRR6706286	Control	23.081
	SRR6706287	Light intensity 50%	24.544
	SRR6706288	Light intensity 20%	30.863
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.393
	CNS0095593	Slightly white alabastrum(diploid) 2	18.260
	CNS0095594	Slightly white alabastrum(diploid) 3	8.320
	CNS0095595	Whole white alabastrum(diploid) 2	14.095
	CNS0095596	Whole white alabastrum(diploid) 3	12.379
	CNS0095597	Whole white alabastrum(diploid) 4	8.992
	CNS0095598	Silvery flower (diploied) 1	8.050
	CNS0095599	Silvery flower (diploied) 2	7.700
	CNS0095600	Silvery flower (diploied) 3	3.691
	CNS0095601	Golden flower (diploid) 1	7.446
	CNS0095602	Golden flower (diploid) 2	4.730
	CNS0095603	Golden flower (diploid) 3	4.487
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.840
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.164
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.504
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.850
	CNS0095610	Silvery flower (tetraploid) 1	0.877
	CNS0095611	Silvery flower (tetraploid) 2	4.539
	CNS0095612	Silvery flower (tetraploid) 3	1.899
	CNS0095613	Golden flower (tetraploid) 1	0.104
	CNS0095614	Golden flower (tetraploid) 2	0.070
	CNS0095615	Golden flower (tetraploid) 3	0.006
CRA001975	CRR073297	Stem 1	29.438
	CRR073298	Stem 2	29.038
	CRR073299	Stem 3	32.337
	CRR073300	Leaf 1	31.963
	CRR073301	Leaf 2	29.211
	CRR073302	Leaf 3	30.395
	CRR073303	Juvenile bud 1	21.537
	CRR073304	Juvenile bud 2	24.037
	CRR073305	Juvenile bud 3	26.889
	CRR073306	Third green 1	0.707
	CRR073307	Third green 2	0.130
	CRR073308	Third green 3	0.544
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.073
	CRR073311	Second white 3	0.097
	CRR073312	Silver flowering 1	0.052
	CRR073313	Silver flowering 2	0.018
	CRR073314	Silver flowering 3	0.032
	CRR073315	Gold flowering 1	2.772
	CRR073316	Gold flowering 2	3.815
	CRR073317	Gold flowering 3	9.590
	CRR073318	Tawny withering 1	8.053
	CRR073319	Tawny withering 2	4.004
	CRR073320	Tawny withering 3	4.691