Gene detail

Detail information of GWHGAAZE010755

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007034091.1	Leucine-rich receptor-like protein kinase family protein [Theobroma cacao]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|A0A061EKW3\|A0A061EKW3_THECC	Leucine-rich receptor-like protein kinase family protein {ECO:0000313\|EMBL:EOY05017.1}
TAIR10	AT3G28040.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	23560659	23564981	-
GWHAAZE00000003	mRNA	23560659	23564981	-
GWHAAZE00000003	exon	23560659	23560802	-
GWHAAZE00000003	exon	23561147	23562125	-
GWHAAZE00000003	exon	23563347	23564893	-
GWHAAZE00000003	exon	23564976	23564981	-
GWHAAZE00000003	CDS	23564976	23564981	-
GWHAAZE00000003	CDS	23563347	23564893	-
GWHAAZE00000003	CDS	23561147	23562125	-
GWHAAZE00000003	CDS	23560659	23560802	-

Transcript Sequence
>GWHTAAZE010767 ATGACTCACATCAGAGTTTTTGAATACACAAATAATGACTCTGAGAGCAAATCAATAGTTAATGCTTCAATTCTCATGGCCTTTCTTCATCAATTCTTCTTCTTCATTCTACTCATTAATACTGTCACATTTATATGCTGCAATGGCGAACAAGATAGTAGTACTACTGCGACGAATCTCCCATTAAACGACGATGTTTTAGGACTCGTCGTCTTCAAATCCTCCCTCGAAGACCCGCACTCCTATCTTTCGTCGTGGAACGAAGACGATACTTCGCCGTGTTCATGGAACTTCATCAAATGCAACCCGTTTAATGGTCGTGTCACCGAGCTATCAATCGATGGGCTGAATTTGTCCGGCAAAATCGGCCGAGGCCTACAAAAGCTGCAACATCTCAAGGTCTTATCGTTATCGAATAACAATTTCTCCGGTCCCATTAGTCCGTATCTACCCGCTATCCAAACACTCGAAAAGTTAAACCTCAGTCGAAACAGCCTTACTGGCCTCATTCCTGACACAACTTTTAGTAACATTAAATTCCTAGACCTCTCGAAAAACTCGTTATCAGGTCCACTCCCTGATAATATTTTCGAGAACTGTTCTGCTCTCCGGCTACTTTCTTTAGCTGAAAATCGGTTCGAAGGTCCACTGCCTAGTACACTTTCCAAATGCATCACTCTTAGCAATCTCAATTTATCCAACAATCATTTCTCCGGCAACTACCCGGCCGGAATATGGTCTTTCACGAGGCTCCGGACCCTCGACTTGTCCCGGAACATTCTCTCGGGTGAAGTACCGACCGGAGTTTCGGCCGTGCATAACTTGAAAGAGCTACTGTTGCAAGGGAATCAGTTATCAGGTTTTTTACCTAGTGATATTGGTTTTTGCCCACATTTGAGTAAGTTGGATTTGAGTGATAATTTTTTCACAGGACCAATTCCACATTCACTCCAAAACCATAATTCTCTTACCCTTTTGAATTTATCGATTAACAGACTCACCGGAGATTTCCCCTGGTGGATCGGTACAATGGTTTCCCTCCGATGGGTTGACTTTTCGGGCAATGGGTTGACCGGAGCTTTACCGACATCCGTTGGAGACTTAAAATCATTGAGTCATCTAAGTTTAGCTGATAATAAACTAAATGGGACCATACCCGAAGAATTGTTCGACATAGGATTGGACTACATTGATCTTTCTAGGAACGAAATCAGTGGTTCGATACCGGATGGTTCGGGTAAGATATTTGAAAATCTTCAAGTTTTAGACCTATCGAAAAATGGACTCACCGGAGATATTCTGGCCGAGATGGGACTTTACTCAAAGTTGAGGTACTTGAATTTGTCATGGAACCATTTTGAAACAAGAGTTCCACCAGAGTTGGGGTATTTTCAGAATCTAAGTGTGTTGGATCTTAGAAATAATGCCCTGTTTGGATCAATCCCTGGTGATATATGTGAATCTGGGAGCCTTGGAATTCTTCAGTTGGATGGAAATTCTTTGACTGGTCCCATTCCTCAGGAGATTCAAAATTGTTCATCTCTCTACCTACTGAGCTTGTCACACAACAGCTTAACTGGATCAATTCCCAAATCAATTGCAATGTTGCAAGGGCTCAAGATTCTCAAGTTGGAGTGCAACAATTTGAGTGGAGAGATCCCACAAGAACTGGGCACTCTACAAAATCTTCTTGCTGTGAACATATCCTACAACAGGCTACAAGGAAGGCTACCTGTTGGTGGTATTTTTCCAAGCTTGGATCAAAGTGCATTGCTTGGGAATTTGGGTATTTGTTCACCATTGTTAAAGGGACCATGTAAGATGAATGTCCCTAAGCCTCTTTTCCTTGATCCCTTTGCTTATAACAACCAAATGGGTAGTGGCAATGACAGGGGAAACAAGCCGAATTCGCACAACCCGAGTCACAACCGGCACCACAGATTCCTCAGTGTTTCGGCCATTGTCGCAATATTAGCCGCCGTGATTATTGCGATTGGGGTTATAGTGATAAGTTTGCTAAATATTTCGGCTCGAAGGAGGCTAGCATTTGTCGATAATGCCTTGGAGAGTATGTGCTCAAGCTCATCTCGTTCGGGTACTTTTTCGTCTGGGAAACTCATACTATTTAATGCAAAATCTCCATCACTTGATGATGATTGGGTTAGCGGCTCACCCGAAGCCCTACTCACCAAAGCGACAGAGATTGGCACCGGGGCTTTTGGGACTGTGTACAAGGCTTTTCTAGGAGGAGGGCCCGAAGGGCCAATGGTCGCGATCAAGAAGCTTGTAACGTCAAATATAATCCAATATCAAGAGGATTTTGATAGAGAGGTACGGATCTTGGCAAAAGCCAGGCATCAGAACCTGATAGAATTGAAAGGATACTATTGGACACCGCAATTGCAGCTTTTGGTATCAGACTTAGCACCCAATGGGAGCTTACAGTCTAGACTCCATGACAGAGGCGGAGTACCTGGTACTCCACCTCTGTCCTGGCTTAACCGGTTCAAAATATTGCTCGAACTGCAAAGGGGGAATGTGCTCGAAAGGCGTCGACCAAAGAATGGGCGGTTTCCCGGAGGAGGAGGTTTTGCCGGTACTGAAACTGGCATTAGTGTGTACTTCTCAGATACCTTCGAGCAGGCCATCCATGTCGGAAGTAGTTCAAATATTGCA

Network for GWHGAAZE010755

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	63	102	2.50E-12
PF13855.7	LRR_8	155	213	1.40E-06
PF00560.34	LRR_1	299	319	0.79
PF13855.7	LRR_8	393	453	1.60E-06
PF07714.18	PK_Tyr_Ser-Thr	731	821	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.784
	SRR3591706	second leaf	14.319
	SRR3591707	mature leaf	1.616
	SRR3591708	Shoot apex	9.194
	SRR3591709	Stem	1.046
	SRR3591710	White floral bud	7.425
	SRR3591711	White flower	2.004
	SRR3591712	Green floral bud	23.611
	SRR3591713	Yellow flower	0.042
SRP173429	SRR8316895	Juvenile bud stage	8.575
	SRR8316896	Juvenile bud stage	7.949
	SRR8316897	Juvenile bud stage	2.691
	SRR8316894	Third green stage	6.886
	SRR8316900	Third green stage	18.801
	SRR8316901	Third green stage	14.711
	SRR8316898	Complete white stage	1.747
	SRR8316899	Complete white stage	19.461
	SRR8316903	Complete white stage	3.203
	SRR8316902	Silver flowering stage	0.030
	SRR8316904	Silver flowering stage	0.042
	SRR8316905	Silver flowering stage	0.038
	SRR8316906	Gold flowering stage	0.011
	SRR8316907	Gold flowering stage	0.055
	SRR8316908	Gold flowering stage	0.031
SRP132670	SRR6706286	Control	23.798
	SRR6706287	Light intensity 50%	24.790
	SRR6706288	Light intensity 20%	30.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.847
	CNS0095593	Slightly white alabastrum(diploid) 2	6.999
	CNS0095594	Slightly white alabastrum(diploid) 3	4.072
	CNS0095595	Whole white alabastrum(diploid) 2	6.707
	CNS0095596	Whole white alabastrum(diploid) 3	5.287
	CNS0095597	Whole white alabastrum(diploid) 4	4.381
	CNS0095598	Silvery flower (diploied) 1	5.543
	CNS0095599	Silvery flower (diploied) 2	5.345
	CNS0095600	Silvery flower (diploied) 3	2.981
	CNS0095601	Golden flower (diploid) 1	4.389
	CNS0095602	Golden flower (diploid) 2	3.663
	CNS0095603	Golden flower (diploid) 3	4.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.673
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.016
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.249
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.038
	CNS0095610	Silvery flower (tetraploid) 1	0.446
	CNS0095611	Silvery flower (tetraploid) 2	2.051
	CNS0095612	Silvery flower (tetraploid) 3	0.975
	CNS0095613	Golden flower (tetraploid) 1	0.011
	CNS0095614	Golden flower (tetraploid) 2	0.030
	CNS0095615	Golden flower (tetraploid) 3	0.067
CRA001975	CRR073297	Stem 1	22.593
	CRR073298	Stem 2	22.519
	CRR073299	Stem 3	25.118
	CRR073300	Leaf 1	23.695
	CRR073301	Leaf 2	20.439
	CRR073302	Leaf 3	23.676
	CRR073303	Juvenile bud 1	17.429
	CRR073304	Juvenile bud 2	19.692
	CRR073305	Juvenile bud 3	21.212
	CRR073306	Third green 1	0.485
	CRR073307	Third green 2	0.043
	CRR073308	Third green 3	0.460
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.014
	CRR073311	Second white 3	0.057
	CRR073312	Silver flowering 1	0.026
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.139
	CRR073315	Gold flowering 1	1.266
	CRR073316	Gold flowering 2	3.155
	CRR073317	Gold flowering 3	5.246
	CRR073318	Tawny withering 1	3.937
	CRR073319	Tawny withering 2	1.909
	CRR073320	Tawny withering 3	2.184