Gene detail

Detail information of GWHGAAZE009446

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP45677.1	hypothetical protein JCGZ_17284 [Jatropha curcas]
Swissprot	tr\|C0LGD7\|Y1684_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (Precursor)
trEMBL	tr\|K4CT54\|K4CT54_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g055570.2.1}
TAIR10	AT1G06840.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	110446939	110456296	+
GWHAAZE00000002	mRNA	110446939	110456296	+
GWHAAZE00000002	exon	110446939	110447044	+
GWHAAZE00000002	exon	110447707	110447857	+
GWHAAZE00000002	exon	110448057	110448128	+
GWHAAZE00000002	exon	110448281	110448352	+
GWHAAZE00000002	exon	110448497	110448610	+
GWHAAZE00000002	exon	110448763	110448834	+
GWHAAZE00000002	exon	110448917	110448988	+
GWHAAZE00000002	exon	110449152	110449226	+
GWHAAZE00000002	exon	110450176	110450244	+
GWHAAZE00000002	exon	110450367	110450435	+
GWHAAZE00000002	exon	110450607	110450678	+
GWHAAZE00000002	exon	110450898	110450984	+
GWHAAZE00000002	exon	110451748	110451816	+
GWHAAZE00000002	exon	110452019	110452518	+
GWHAAZE00000002	exon	110452603	110452761	+
GWHAAZE00000002	exon	110453289	110453572	+
GWHAAZE00000002	exon	110454233	110454284	+
GWHAAZE00000002	exon	110454672	110454730	+
GWHAAZE00000002	exon	110455922	110456296	+
GWHAAZE00000002	CDS	110446939	110447044	+
GWHAAZE00000002	CDS	110447707	110447857	+
GWHAAZE00000002	CDS	110448057	110448128	+
GWHAAZE00000002	CDS	110448281	110448352	+
GWHAAZE00000002	CDS	110448497	110448610	+
GWHAAZE00000002	CDS	110448763	110448834	+
GWHAAZE00000002	CDS	110448917	110448988	+
GWHAAZE00000002	CDS	110449152	110449226	+
GWHAAZE00000002	CDS	110450176	110450244	+
GWHAAZE00000002	CDS	110450367	110450435	+
GWHAAZE00000002	CDS	110450607	110450678	+
GWHAAZE00000002	CDS	110450898	110450984	+
GWHAAZE00000002	CDS	110451748	110451816	+
GWHAAZE00000002	CDS	110452019	110452518	+
GWHAAZE00000002	CDS	110452603	110452761	+
GWHAAZE00000002	CDS	110453289	110453572	+
GWHAAZE00000002	CDS	110454233	110454284	+
GWHAAZE00000002	CDS	110454672	110454730	+
GWHAAZE00000002	CDS	110455922	110456296	+

Transcript Sequence
>GWHTAAZE009456 ATGTTGACGTTAAGAACTTCTCTTCAGAGAGTGGTTTTGATCATCTGGATGTGTTGGTCTTTATTGCTTATTGTAGCAGATAGCAATGTTACCCACCCAATAGAAGTGACAGCATTGCGGGCCATTAGGCAAAGTTTGGTTGATCCGAACAGGAACCTCAGTAACTGGAGGCGGGGAGATCCATGTACATCGAACTGGACTGGGGTTTTGTGCTTCAATACAACAATGAATGATGGCTATCTCCATGTCAGAGAATTGCAACTATTGAACATGAATCTCTCTGGAACTTTATCACCAGAGCTAGGCCGCTTAGCCTATATGCAAATATTGGATTTTATGTGGAACAAGATAACTGGGAGTATTCCGAGGGAGATAGGAAGCATTACATCTTTGGAGCTTTTGCTCTTAAATGGAAATCAGTTAACAGGTTCCTTGCCTGAAGAACTTGGCTACCTTTCAAACTTGGACAGAATACAAATTGATCAGAATCATATATCTGGACCAATACCCAGGACCCACATGAACAACAATTCATTGAGTGGGCAAATCCCTCCTGAGCTGTCTACATTGCCAATTCTTGTTCACATACTGCTTGACAATAACAACTTATCAGGGTACCTTCCCCCAGAGCTGGCTCAACTACCAAATCTACTTATACTTCAACTTGATAACAACCAGTTTGAAGGGAGCACAATACCGGCTTCGTATGGTAACATGTCTCGCTTGTTGAAGTTGAGTCTTAGGAACTGCAGTTTGCAAGGACCAATCCCTGACCTAACCCGGATACCAAACCTTGCTTATATAGACCTCAGTTCAAACCAGCTTCAAGGATCCATACCACCAGATAAGCTTTCTGAGAATATCACATACATTGATTTGTCAAACAACAACCTCAATGGAACTATTCCTGCCAACTTTTCGGGCCTTCCTCGTCTTCAGAGATTGGCTCTTTCAAACAATTCATTAAGTGGTTCTCTTCTATCCACTATTTGGCAAAATAGGATGTTCAATGCAACTGAGAAGCTTATTGTGGATTTGCAGAACAATATGCTTTCAAATATCTCAGGCAGTCTTAGTGTCCCTGCAAATGTTACTCTCAGTCTTCAAGGTAATCCTATATGCTCAAACGCCAACGTGGTCCAATTCTGTGGATCTCAGAACGTAGAAGGCATTAAATTCCAGAGCTTAAAGATCTCCAATGATTCATGCAACCCATCATGCCCCCCTCCTTATGAATATGCTCCCAACTCTCCTACCCGTTGCTTCTGTGCTGCGCCTCTGCTCGTTGGGTATCGGTTAAAAAGCCCTGGATTCTCGGATTTTGTTCCATATAACTATCAATTTGAGGTGTACTTAACCTCTGGTCTCAAATTAGAACTTTTTCAGCTCGATCTTGTTTCATTTGAATATCAAAATGGACCTCGAGTGAAGATGAACTTGAAGATTTTTCCTGTATATGTTGACAACAACTCTTACATATTCAATAGGAGTGAGGTCCTACGGATTCGTAGCATGTTCACAGGGTGGTTGATTCCTGATAGTGAAATTTTTGGACCATATGAACTTCTCGACTTCGTGCTATGGGGCCCATATATAGATGTGGTTCCCACCTCTTCAAACTCTGGTATAAGCAATGGCAAATTAGCTGGGATTGTTGTAGCAGCAATTGCAGGTGCATTTACGTTATCTGCATTAGCATTTCTTCTTTTCTGGAGATGGCACCTGAAGAAGCATCTCAGAGTTTCCAAAAGGCGTCAATCGTCTCGGGCATCCATCAAAATTGATGGGGTGAAAAGCTTCAGTTACAATGAAATGACAGTGGCAACGGACAATTTCAGTAGCTCTGCTCAAGTTGGGCAAGGAGGGTATGGAAAGGTCTATAAAGGGACTCTTGCTGATGGCACAGTTGTGGCTATAAAACGTGCACAGGAGGGATCATTGCAGGGTGAAAAGGAGTTTCTTACGGAAATAGAATTATTGTCGAGGTTACATCATCGGAATCTAGTGTCTTTGCTTGGATATTGTGATGAAGAAGGTGAACAGATGTTGGTTTATGAGTTCATGCCGAATGGCACCCTGAGGGATCACATATCTGTTGCCAATATTGAAGGCCTTGTGCCTGCTCATGTATCCACAGTTGTTAAGGGTACCCCGGTGAACGTTGCATATCGATCTGGTATGATATTCTCGGTCATAGATGAACAGATGGGATCATATCCATCGGAATGCGTGGAAAAATTTGTAACCTTGGCCCTCAAGTGTTGCCAAGACGAGACCGATGCACGACCTTCGATGGCCGAAGTGGTTCGAGAACTGGAAAACATATGGCTTATGATGCCTGAATCCGACACAAAAACACACAAACATTCGTCGTCCATAACGGACTCCGAGAAGGCCGTCTCCCCACAACCTTCATCGTCTACGACAATGAATAATCCTATGTTTCATCTGATGTGTCGGGCAGTGACCTTGTCAGTGGCGTTGTGCCCACTATTACGCCTAGATAATTATTTTAGTTATTTCTTTTAA

Network for GWHGAAZE009446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	35	71	8.10E-08
PF13855.7	LRR_8	263	322	8.80E-09
PF07714.18	PK_Tyr_Ser-Thr	615	699	6.40E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.140
	SRR3591706	second leaf	14.895
	SRR3591707	mature leaf	21.994
	SRR3591708	Shoot apex	7.497
	SRR3591709	Stem	7.930
	SRR3591710	White floral bud	10.444
	SRR3591711	White flower	4.469
	SRR3591712	Green floral bud	19.634
	SRR3591713	Yellow flower	10.046
SRP173429	SRR8316895	Juvenile bud stage	4.033
	SRR8316896	Juvenile bud stage	7.801
	SRR8316897	Juvenile bud stage	2.830
	SRR8316894	Third green stage	4.736
	SRR8316900	Third green stage	24.629
	SRR8316901	Third green stage	21.990
	SRR8316898	Complete white stage	3.318
	SRR8316899	Complete white stage	16.645
	SRR8316903	Complete white stage	7.416
	SRR8316902	Silver flowering stage	2.361
	SRR8316904	Silver flowering stage	3.582
	SRR8316905	Silver flowering stage	1.492
	SRR8316906	Gold flowering stage	10.639
	SRR8316907	Gold flowering stage	4.405
	SRR8316908	Gold flowering stage	13.097
SRP132670	SRR6706286	Control	14.268
	SRR6706287	Light intensity 50%	17.181
	SRR6706288	Light intensity 20%	19.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.934
	CNS0095593	Slightly white alabastrum(diploid) 2	4.991
	CNS0095594	Slightly white alabastrum(diploid) 3	3.902
	CNS0095595	Whole white alabastrum(diploid) 2	7.606
	CNS0095596	Whole white alabastrum(diploid) 3	6.152
	CNS0095597	Whole white alabastrum(diploid) 4	4.542
	CNS0095598	Silvery flower (diploied) 1	3.252
	CNS0095599	Silvery flower (diploied) 2	2.964
	CNS0095600	Silvery flower (diploied) 3	2.912
	CNS0095601	Golden flower (diploid) 1	2.545
	CNS0095602	Golden flower (diploid) 2	4.614
	CNS0095603	Golden flower (diploid) 3	4.174
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.152
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.601
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.183
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.388
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.480
	CNS0095610	Silvery flower (tetraploid) 1	3.602
	CNS0095611	Silvery flower (tetraploid) 2	3.266
	CNS0095612	Silvery flower (tetraploid) 3	6.638
	CNS0095613	Golden flower (tetraploid) 1	4.879
	CNS0095614	Golden flower (tetraploid) 2	5.771
	CNS0095615	Golden flower (tetraploid) 3	3.099
CRA001975	CRR073297	Stem 1	12.574
	CRR073298	Stem 2	10.664
	CRR073299	Stem 3	5.343
	CRR073300	Leaf 1	34.062
	CRR073301	Leaf 2	23.568
	CRR073302	Leaf 3	20.032
	CRR073303	Juvenile bud 1	15.921
	CRR073304	Juvenile bud 2	15.773
	CRR073305	Juvenile bud 3	15.086
	CRR073306	Third green 1	3.307
	CRR073307	Third green 2	3.025
	CRR073308	Third green 3	3.741
	CRR073309	Second white 1	1.167
	CRR073310	Second white 2	3.027
	CRR073311	Second white 3	2.754
	CRR073312	Silver flowering 1	3.882
	CRR073313	Silver flowering 2	4.712
	CRR073314	Silver flowering 3	3.467
	CRR073315	Gold flowering 1	13.240
	CRR073316	Gold flowering 2	18.976
	CRR073317	Gold flowering 3	12.479
	CRR073318	Tawny withering 1	21.413
	CRR073319	Tawny withering 2	25.108
	CRR073320	Tawny withering 3	12.570