Gene detail

Detail information of GWHGAAZE007544

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804960.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Nicotiana sylvestris]
Swissprot	tr\|C0LGS2\|Y4361_ARATH	1E-178	Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (Precursor)
trEMBL	tr\|A0A068U170\|A0A068U170_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01924.1}
TAIR10	AT4G36180.1	6E-146	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	47294948	47295874	+
GWHAAZE00000002	mRNA	47294948	47295874	+
GWHAAZE00000002	exon	47294948	47295874	+
GWHAAZE00000002	CDS	47294948	47295874	+

Transcript Sequence
>GWHTAAZE007552 ATGTTCAACAACAAGATCACTCTAGCTGAAACATTAGAAGCAACAAGGCAATTTGACGAAGAACATGTGCTGAGCCGAACCCGTTACGGATTAGTATTCAAGGCCTGTTATAATGACGGGATGGTCCTCTCAATCCGTCGACTCCCCAATGGGTCACTGGACGAAAACATGTTTAGAAAAGAAGTCGAATCGCTAGGGAGAGTGAAGCACCGAAACCTAACAGTCCTTCGGGGCTACTATGCTGGTGCACCGGACCTAAGGCTCCTAGTCTACGACTACATGCCAAATGGAAACTTAGCGACCCTCCTTCAAGAAGCGTCTCACCAAGACGGGCACGTTCTCAATTGGCCAATGAGGCACCTGATCGCACTAGGTATCGCACGAGGTCTAGCATTTCTCCACACAACCTCCATGGTTCACGGTGACATAAAGCCCCAAAACGTACTATTCGATGCTGATTTCGAAGCCCATTTATCCGATTTCGGCCTAGACAAGCTCATTACACCCAGCGAACCGTCAACTTCAACTTACGGTACAATAGGCTACATATCACCGGAATCAGCATTAACCGGCGAAACAACTAAAGAATCGGATGTGTACAGTTTTGGCATAGTTTTGCTGGAGCTATTGACAGGGAAGAGGCCATTGATGTTCACTGAAGATGAGGATATAGTGAAGTGGGTGAAGAGGCAATTACAAAGAGGGCAAATTTCAGAGTTGCTAGAGCCTGGGTTGCTTGAGCTGGACCCTGAGTCATCCGAGTGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGGTTGCTTTGTACTGCACCGGACCCGCTTGACCGGCCGGCCATGGCCGATGTTGTGTTCATGCTTGAAGGTTGCCGTGTGGGTCCCGATATTCCGTCATCAGCGGATCCGACATACCATCATTCACCGGCGTGA

Network for GWHGAAZE007544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	27	242	5.90E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.730
	SRR3591706	second leaf	1.341
	SRR3591707	mature leaf	0.145
	SRR3591708	Shoot apex	9.533
	SRR3591709	Stem	3.264
	SRR3591710	White floral bud	1.206
	SRR3591711	White flower	1.077
	SRR3591712	Green floral bud	1.014
	SRR3591713	Yellow flower	0.103
SRP173429	SRR8316895	Juvenile bud stage	3.994
	SRR8316896	Juvenile bud stage	4.186
	SRR8316897	Juvenile bud stage	0.968
	SRR8316894	Third green stage	1.014
	SRR8316900	Third green stage	2.070
	SRR8316901	Third green stage	2.182
	SRR8316898	Complete white stage	0.028
	SRR8316899	Complete white stage	1.654
	SRR8316903	Complete white stage	0.273
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.076
	SRR8316908	Gold flowering stage	0.039
SRP132670	SRR6706286	Control	1.757
	SRR6706287	Light intensity 50%	1.458
	SRR6706288	Light intensity 20%	1.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.194
	CNS0095593	Slightly white alabastrum(diploid) 2	4.406
	CNS0095594	Slightly white alabastrum(diploid) 3	5.572
	CNS0095595	Whole white alabastrum(diploid) 2	2.025
	CNS0095596	Whole white alabastrum(diploid) 3	1.091
	CNS0095597	Whole white alabastrum(diploid) 4	0.572
	CNS0095598	Silvery flower (diploied) 1	2.201
	CNS0095599	Silvery flower (diploied) 2	2.464
	CNS0095600	Silvery flower (diploied) 3	0.927
	CNS0095601	Golden flower (diploid) 1	3.343
	CNS0095602	Golden flower (diploid) 2	2.014
	CNS0095603	Golden flower (diploid) 3	2.122
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.222
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.596
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.246
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.729
	CNS0095610	Silvery flower (tetraploid) 1	0.299
	CNS0095611	Silvery flower (tetraploid) 2	1.036
	CNS0095612	Silvery flower (tetraploid) 3	0.213
	CNS0095613	Golden flower (tetraploid) 1	0.172
	CNS0095614	Golden flower (tetraploid) 2	0.361
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	6.897
	CRR073298	Stem 2	7.101
	CRR073299	Stem 3	6.792
	CRR073300	Leaf 1	1.768
	CRR073301	Leaf 2	2.121
	CRR073302	Leaf 3	1.368
	CRR073303	Juvenile bud 1	2.135
	CRR073304	Juvenile bud 2	0.151
	CRR073305	Juvenile bud 3	1.849
	CRR073306	Third green 1	0.045
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.152
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.049
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.267
	CRR073317	Gold flowering 3	1.037
	CRR073318	Tawny withering 1	11.667
	CRR073319	Tawny withering 2	7.986
	CRR073320	Tawny withering 3	14.145